Wall clock time and date at job start Sun Mar 29 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50690 * 109.47139 * 2 1 4 4 C 1.34164 * 124.95236 * 89.71941 * 3 2 1 5 5 C 1.46448 * 106.17628 * 179.86390 * 4 3 2 6 6 C 1.40643 * 105.47755 * 0.38848 * 5 4 3 7 7 C 1.39327 * 118.05962 * 179.76502 * 6 5 4 8 8 C 1.37827 * 119.10220 * 359.97438 * 7 6 5 9 9 N 1.32200 * 121.63424 * 0.02562 * 8 7 6 10 10 C 1.32508 * 121.98660 * 359.97438 * 9 8 7 11 11 N 1.38494 * 120.04298 * 179.97438 * 10 9 8 12 12 C 1.46495 * 119.99959 * 266.90597 * 11 10 9 13 13 C 1.36894 * 119.99759 * 86.90092 * 11 10 9 14 14 H 1.07993 * 120.00329 * 0.36938 * 13 11 10 15 15 C 1.38778 * 119.99684 * 180.36708 * 13 11 10 16 16 N 1.31586 * 120.00255 * 344.26326 * 15 13 11 17 17 Si 1.86801 * 119.99914 * 164.25827 * 15 13 11 18 18 H 1.48503 * 109.46901 * 60.00130 * 17 15 13 19 19 H 1.48490 * 109.47191 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47216 * 300.00526 * 17 15 13 21 21 O 1.34374 * 107.38676 * 359.76578 * 6 5 4 22 22 H 1.09001 * 109.46976 * 60.00491 * 1 2 3 23 23 H 1.09000 * 109.46879 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47229 * 299.99654 * 1 2 3 25 25 H 1.09000 * 109.46887 * 239.99962 * 2 1 3 26 26 H 1.08998 * 109.47022 * 120.00278 * 2 1 3 27 27 H 1.08001 * 126.91115 * 0.02562 * 4 3 2 28 28 H 1.07998 * 120.44741 * 179.97438 * 7 6 5 29 29 H 1.08002 * 119.18359 * 180.02562 * 8 7 6 30 30 H 1.09004 * 109.47610 * 5.35048 * 12 11 10 31 31 H 1.08996 * 109.47402 * 125.35381 * 12 11 10 32 32 H 1.09008 * 109.47171 * 245.34933 * 12 11 10 33 33 H 0.97000 * 119.99901 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2835 2.1472 1.0996 5 6 2.7510 3.4525 0.6283 6 6 2.7235 3.3765 -0.7758 7 6 3.1198 4.4983 -1.5008 8 6 3.5193 5.6289 -0.8213 9 7 3.5359 5.6742 0.4998 10 6 3.1703 4.6394 1.2424 11 7 3.2038 4.7310 2.6238 12 6 4.3930 4.2924 3.3584 13 6 2.1257 5.2314 3.3030 14 1 1.2468 5.5492 2.7619 15 6 2.1622 5.3303 4.6867 16 7 3.0762 4.6743 5.3693 17 14 0.9140 6.3946 5.5803 18 1 -0.4558 5.8988 5.2921 19 1 1.1663 6.3318 7.0423 20 1 1.0395 7.7998 5.1168 21 8 2.2888 2.1477 -1.1029 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.1670 1.8318 2.1260 28 1 3.1141 4.4821 -2.5807 29 1 3.8264 6.4993 -1.3820 30 1 5.1757 4.0169 2.6515 31 1 4.7470 5.1037 3.9943 32 1 4.1412 3.4301 3.9759 33 1 3.1019 4.7437 6.3365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:07 Heat of formation + Delta-G solvation = 69.806438 kcal Electronic energy + Delta-G solvation = -17587.379728 eV Core-core repulsion = 14808.893799 eV Total energy + Delta-G solvation = -2778.485929 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.13106 -38.54572 -35.51825 -34.12476 -32.00238 -31.41471 -29.98397 -28.01538 -26.06625 -24.48613 -23.37387 -22.29092 -21.18070 -20.12254 -17.55435 -16.79733 -16.45077 -15.81650 -15.51827 -14.78886 -14.29992 -13.99997 -13.81329 -13.49956 -13.15255 -12.72270 -12.46222 -12.12806 -11.96912 -11.64862 -11.47959 -11.13499 -10.90463 -10.79641 -10.55311 -10.23559 -9.94927 -9.55433 -9.08398 -8.76097 -8.60499 -7.56577 -7.23869 -5.81636 -3.24393 1.31126 1.89564 2.75544 2.96081 3.37022 3.42335 3.45554 4.31196 4.43169 4.66910 4.84324 5.02086 5.13722 5.22577 5.33670 5.43208 5.49297 5.56343 5.69587 5.78951 5.85683 5.98630 6.15385 6.25808 6.40814 6.45541 6.63151 6.85159 6.93161 7.44612 7.48577 7.68074 7.77929 8.25888 8.77454 9.11013 9.78720 10.11204 11.19989 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.007884 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.949670 B = 3550.827422 C = 4296.320149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C -0.007 4.007 4 C -0.147 4.147 5 C -0.191 4.191 6 C 0.086 3.914 7 C -0.198 4.198 8 C 0.124 3.876 9 N -0.516 5.516 10 C 0.476 3.524 11 N -0.555 5.555 12 C 0.174 3.826 13 C -0.253 4.253 14 H 0.075 0.925 15 C 0.009 3.991 16 N -0.906 5.906 17 Si 0.910 3.090 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.282 1.282 21 O -0.196 6.196 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.131 0.869 29 H 0.156 0.844 30 H -0.004 1.004 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 -7.368 -10.770 13.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.054 4.054 4 C -0.167 4.167 5 C -0.198 4.198 6 C 0.031 3.969 7 C -0.220 4.220 8 C -0.030 4.030 9 N -0.231 5.231 10 C 0.242 3.758 11 N -0.276 5.276 12 C 0.032 3.968 13 C -0.380 4.380 14 H 0.093 0.907 15 C -0.189 4.189 16 N -0.551 5.551 17 Si 0.739 3.261 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.208 1.208 21 O -0.097 6.097 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.177 0.823 28 H 0.149 0.851 29 H 0.173 0.827 30 H 0.015 0.985 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.177 -6.712 -10.400 12.434 hybrid contribution -0.877 0.018 0.174 0.894 sum -2.054 -6.694 -10.227 12.394 Atomic orbital electron populations 1.21810 0.94052 1.02043 1.02926 1.20079 0.96313 0.87365 1.03919 1.22271 1.04515 0.94930 0.83656 1.22210 1.03428 0.91786 0.99301 1.21507 1.07215 0.98108 0.92985 1.19793 0.98147 0.85329 0.93600 1.20766 1.09662 0.91183 1.00342 1.22341 0.94807 0.95734 0.90104 1.68144 1.17219 1.31541 1.06233 1.17876 0.85593 0.84892 0.87448 1.41298 1.16489 1.73343 0.96458 1.21104 0.83606 1.00226 0.91902 1.19061 0.93348 1.36463 0.89155 0.90665 1.24802 0.98661 0.99395 0.95999 1.70195 1.36440 1.42015 1.06432 0.86240 0.80399 0.80992 0.78441 1.20855 1.21371 1.20832 1.83793 1.69815 1.21670 1.34435 0.92417 0.91806 0.91795 0.90300 0.88717 0.82289 0.85088 0.82669 0.98521 0.93465 0.92460 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.04 -0.45 6.44 -27.89 -0.18 -0.63 16 3 C -0.01 -0.12 6.49 -35.75 -0.23 -0.35 16 4 C -0.15 -2.84 11.00 -37.71 -0.41 -3.26 16 5 C -0.19 -4.16 6.36 -105.00 -0.67 -4.83 16 6 C 0.09 1.65 7.49 -38.27 -0.29 1.36 16 7 C -0.20 -3.30 10.13 -39.33 -0.40 -3.70 16 8 C 0.12 2.19 11.13 -17.54 -0.20 2.00 16 9 N -0.52 -11.71 10.39 -12.31 -0.13 -11.84 16 10 C 0.48 11.53 5.97 -155.07 -0.93 10.61 16 11 N -0.56 -14.86 3.02 -122.29 -0.37 -15.23 16 12 C 0.17 4.50 8.96 59.84 0.54 5.03 16 13 C -0.25 -7.18 9.76 -15.09 -0.15 -7.33 16 14 H 0.08 2.15 7.88 -52.49 -0.41 1.73 16 15 C 0.01 0.26 5.32 -17.46 -0.09 0.17 16 16 N -0.91 -25.73 9.74 55.49 0.54 -25.19 16 17 Si 0.91 21.98 29.58 -169.99 -5.03 16.95 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 O -0.20 -3.48 10.57 4.80 0.05 -3.43 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.16 3.07 8.06 -52.49 -0.42 2.65 16 28 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.00 -0.09 7.90 -51.93 -0.41 -0.50 16 31 H 0.05 1.29 7.18 -51.93 -0.37 0.92 16 32 H 0.06 1.53 7.01 -51.92 -0.36 1.16 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 286.72 15.07 4.32 4.32 Total: -1.00 -31.39 286.72 -7.33 -38.72 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.08 Total: -2.16 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.64 Total: -2.15 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.04 Total: -52.26 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.05 Total: -3.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.39 -7.33 -38.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.529 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds