Wall clock time and date at job start Sun Mar 29 2020 22:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 119.99775 * 2 1 4 4 H 1.48503 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47174 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47073 * 60.00379 * 3 2 1 7 7 C 1.40025 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99955 * 163.21248 * 7 2 1 9 9 C 1.41551 * 120.00116 * 343.20565 * 7 2 1 10 10 C 1.41188 * 120.99387 * 156.16315 * 9 7 2 11 11 C 1.36561 * 119.14701 * 180.02562 * 10 9 7 12 12 N 1.32093 * 121.26601 * 0.02562 * 11 10 9 13 13 C 1.32531 * 122.21952 * 359.97438 * 12 11 10 14 14 N 1.39082 * 119.65690 * 180.02562 * 13 12 11 15 15 C 1.47731 * 110.99768 * 96.37592 * 14 13 12 16 16 C 1.52194 * 87.54171 * 222.31648 * 15 14 13 17 17 C 1.52743 * 122.21042 * 259.87083 * 16 15 14 18 18 C 1.54285 * 85.28435 * 254.78196 * 17 16 15 19 19 O 1.42714 * 122.42403 * 150.71309 * 16 15 14 20 20 C 1.47739 * 110.99869 * 359.97438 * 14 13 12 21 21 C 1.38742 * 120.68495 * 0.02562 * 13 12 11 22 22 H 0.97003 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.42651 * 0.02562 * 10 9 7 24 24 H 1.08005 * 119.36293 * 179.97438 * 11 10 9 25 25 H 1.08996 * 113.54432 * 336.98795 * 15 14 13 26 26 H 1.09008 * 113.53842 * 107.65081 * 15 14 13 27 27 H 1.08999 * 113.89931 * 8.86820 * 17 16 15 28 28 H 1.09000 * 113.90232 * 140.55293 * 17 16 15 29 29 H 1.08998 * 113.81175 * 92.67721 * 18 17 16 30 30 H 1.08993 * 113.80848 * 224.21220 * 18 17 16 31 31 H 1.09003 * 113.53854 * 252.34720 * 20 14 13 32 32 H 1.08995 * 113.53990 * 22.94511 * 20 14 13 33 33 H 1.08001 * 120.66599 * 180.27050 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2124 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 3.0530 -1.2325 -0.2707 9 6 1.3451 -2.4125 0.3531 10 6 1.8207 -3.6645 -0.0937 11 6 1.1520 -4.7984 0.2697 12 7 0.0721 -4.7440 1.0285 13 6 -0.4195 -3.5977 1.4767 14 7 -1.5599 -3.6025 2.2729 15 6 -1.2050 -3.5541 3.7062 16 6 -2.2876 -4.5975 3.9422 17 6 -3.6724 -4.2287 4.4706 18 6 -3.1846 -4.8328 5.8039 19 8 -2.2160 -5.5475 5.0047 20 6 -2.0495 -4.9797 2.4882 21 6 0.1916 -2.3931 1.1600 22 1 -0.4851 0.8400 0.0004 23 1 2.7021 -3.7248 -0.7150 24 1 1.5126 -5.7579 -0.0705 25 1 -0.1987 -3.9152 3.9180 26 1 -1.4170 -2.5930 4.1749 27 1 -3.8573 -3.1553 4.5135 28 1 -4.4857 -4.7837 4.0031 29 1 -2.7427 -4.1029 6.4821 30 1 -3.9171 -5.4779 6.2888 31 1 -2.9651 -5.2065 1.9421 32 1 -1.2802 -5.7406 2.3574 33 1 -0.2067 -1.4595 1.5290 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166941502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:23 Heat of formation + Delta-G solvation = 66.920948 kcal Electronic energy + Delta-G solvation = -17458.059137 eV Core-core repulsion = 14679.448084 eV Total energy + Delta-G solvation = -2778.611053 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22760 -38.88847 -36.90878 -34.09494 -30.79766 -30.22782 -29.20583 -26.46407 -25.99362 -25.50505 -22.80515 -21.67117 -20.30039 -18.55530 -17.70494 -16.42570 -16.04037 -15.96622 -15.45230 -14.80785 -14.31122 -14.06997 -13.89988 -13.34311 -12.72468 -12.66187 -12.46659 -12.15885 -11.88131 -11.47785 -11.25275 -11.13865 -10.81309 -10.71876 -10.40752 -10.19810 -10.04974 -9.47414 -9.37369 -9.05467 -8.10110 -8.03846 -7.27933 -6.88236 -4.64348 2.60801 2.76931 3.00348 3.05595 3.17378 3.70252 3.82355 4.32196 4.45431 4.58430 4.63513 5.03705 5.15707 5.34000 5.51029 5.63461 5.76469 5.79992 5.93132 5.99386 6.05407 6.21620 6.30465 6.36730 6.57484 6.68205 6.84251 6.89441 7.11603 7.22524 7.45565 7.56828 7.86105 8.17132 8.49893 8.69687 8.70902 9.48075 10.03010 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.006155 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.525512 B = 4547.999353 C = 5201.392511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.453 4.453 8 H 0.083 0.917 9 C 0.132 3.868 10 C -0.277 4.277 11 C 0.114 3.886 12 N -0.599 5.599 13 C 0.245 3.755 14 N -0.410 5.410 15 C 0.017 3.983 16 C 0.056 3.944 17 C -0.151 4.151 18 C 0.031 3.969 19 O -0.365 6.365 20 C 0.023 3.977 21 C -0.195 4.195 22 H 0.284 0.716 23 H 0.101 0.899 24 H 0.121 0.879 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -2.458 7.318 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.484 4.484 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.301 4.301 11 C -0.040 4.040 12 N -0.319 5.319 13 C 0.022 3.978 14 N -0.131 5.131 15 C -0.111 4.111 16 C 0.015 3.985 17 C -0.189 4.189 18 C -0.046 4.046 19 O -0.283 6.283 20 C -0.105 4.105 21 C -0.219 4.219 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.138 0.862 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.467 -2.814 7.275 9.525 hybrid contribution 1.257 1.182 -0.202 1.737 sum -4.210 -1.632 7.073 8.392 Atomic orbital electron populations 1.69799 1.07691 1.29629 1.33047 1.26005 0.94779 1.01627 0.92000 0.86205 0.80975 0.80539 0.78752 1.18235 1.19770 1.19512 1.19648 0.97911 0.90735 1.40081 0.89879 1.17763 0.90361 0.92358 0.87207 1.21604 1.05160 0.93980 1.09307 1.21357 0.91237 0.96836 0.94559 1.67081 1.16390 1.28454 1.19934 1.19813 0.90829 0.90392 0.96804 1.66660 1.21418 1.21464 1.03572 1.23869 0.98248 0.98970 0.89998 1.23301 0.94861 0.90108 0.90250 1.24150 0.96828 1.02910 0.94999 1.23911 0.91013 0.95229 0.94417 1.89562 1.64610 1.43133 1.30974 1.23672 1.01978 0.93813 0.91052 1.21680 1.00088 0.96366 1.03752 0.90491 0.88035 0.86180 0.90280 0.89223 0.90181 0.88506 0.90235 0.89360 0.89739 0.87477 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.74 10.92 55.55 0.61 -19.14 16 2 C 0.08 1.87 5.20 -17.35 -0.09 1.78 16 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.74 9.12 -37.65 -0.34 -12.08 16 8 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 9 C 0.13 3.50 5.60 -106.55 -0.60 2.90 16 10 C -0.28 -6.76 9.85 -39.07 -0.38 -7.15 16 11 C 0.11 2.65 11.10 -18.04 -0.20 2.45 16 12 N -0.60 -14.53 8.16 -12.82 -0.10 -14.63 16 13 C 0.25 6.03 5.86 -154.98 -0.91 5.12 16 14 N -0.41 -8.74 6.41 -182.81 -1.17 -9.91 16 15 C 0.02 0.31 7.58 -6.66 -0.05 0.26 16 16 C 0.06 0.91 2.13 -92.29 -0.20 0.71 16 17 C -0.15 -1.90 8.18 -26.19 -0.21 -2.12 16 18 C 0.03 0.36 9.21 37.12 0.34 0.70 16 19 O -0.37 -5.93 12.47 -35.23 -0.44 -6.37 16 20 C 0.02 0.44 7.33 -6.65 -0.05 0.39 16 21 C -0.19 -5.13 8.68 -38.44 -0.33 -5.46 16 22 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 23 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 24 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 25 H 0.08 1.55 7.89 -51.93 -0.41 1.14 16 26 H 0.09 1.49 8.14 -51.92 -0.42 1.06 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.11 2.21 6.63 -51.93 -0.34 1.86 16 33 H 0.13 3.54 6.21 -52.49 -0.33 3.21 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -28.85 280.60 -8.95 -37.79 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.01 Total: 7.54 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -3.02 Total: -12.49 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.67 Total: -43.68 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.44 Total: -6.37 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.85 -8.95 -37.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166941502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.715 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds