Wall clock time and date at job start Sun Mar 29 2020 22:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86803 * 119.99738 * 2 1 4 4 H 1.48497 * 109.47072 * 240.00430 * 3 2 1 5 5 H 1.48503 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46981 * 120.00492 * 3 2 1 7 7 C 1.40342 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00090 * 168.08283 * 7 2 1 9 9 C 1.40180 * 120.00381 * 348.08394 * 7 2 1 10 10 C 1.39064 * 119.74868 * 153.35835 * 9 7 2 11 11 C 1.42021 * 118.74622 * 179.72278 * 10 9 7 12 12 N 1.32214 * 120.83753 * 180.02562 * 11 10 9 13 13 C 1.46490 * 120.00243 * 186.04733 * 12 11 10 14 14 C 1.52999 * 109.47203 * 245.48185 * 13 12 11 15 15 C 1.53841 * 113.66199 * 274.00139 * 14 13 12 16 16 C 1.51767 * 86.68959 * 220.76240 * 15 14 13 17 17 O 1.20761 * 135.74667 * 205.15954 * 16 15 14 18 18 C 1.51572 * 88.46912 * 25.07581 * 16 15 14 19 19 C 1.46919 * 118.33423 * 0.02562 * 11 10 9 20 20 C 1.34383 * 119.36923 * 359.97438 * 19 11 10 21 21 N 1.36429 * 121.21638 * 0.02562 * 20 19 11 22 22 H 0.97004 * 119.08763 * 179.97438 * 21 20 19 23 23 H 0.97002 * 120.00332 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.62642 * 359.70991 * 10 9 7 25 25 H 1.09003 * 109.47465 * 5.47902 * 13 12 11 26 26 H 1.09000 * 109.47223 * 125.48668 * 13 12 11 27 27 H 1.09000 * 112.88192 * 45.33254 * 14 13 12 28 28 H 1.09001 * 113.66279 * 335.19676 * 15 14 13 29 29 H 1.09004 * 113.66681 * 106.25830 * 15 14 13 30 30 H 1.09005 * 113.66790 * 220.45825 * 18 16 15 31 31 H 1.08995 * 113.66953 * 89.39270 * 18 16 15 32 32 H 1.07996 * 120.31976 * 180.02562 * 19 11 10 33 33 H 1.07997 * 119.39359 * 180.02562 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2398 1.6178 0.0000 4 1 3.0934 1.6965 -1.2125 5 1 1.2748 2.7465 0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0076 -1.2154 -0.0005 8 1 3.0702 -1.2254 -0.1937 9 6 1.3295 -2.4165 0.2496 10 6 1.8234 -3.6086 -0.2687 11 6 1.1227 -4.8137 0.0028 12 7 1.5558 -5.9705 -0.4688 13 6 0.7510 -7.1815 -0.2910 14 6 1.4950 -8.1589 0.6212 15 6 2.4886 -9.0657 -0.1252 16 6 2.0021 -10.1888 0.7722 17 8 2.4582 -11.2306 1.1784 18 6 0.6975 -9.4354 0.9393 19 6 -0.0955 -4.7428 0.8210 20 6 -0.5088 -3.5516 1.2858 21 7 0.1815 -2.4073 1.0113 22 1 -0.1449 -1.5640 1.3623 23 1 -0.4851 0.8400 0.0004 24 1 2.7228 -3.6178 -0.8666 25 1 -0.2055 -6.9191 0.1611 26 1 0.5786 -7.6489 -1.2605 27 1 1.9192 -7.6773 1.5022 28 1 2.2441 -9.2095 -1.1777 29 1 3.5326 -8.7965 0.0357 30 1 0.3032 -9.4633 1.9552 31 1 -0.0504 -9.6832 0.1862 32 1 -0.6530 -5.6396 1.0475 33 1 -1.4040 -3.4991 1.8876 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168398943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:58 Heat of formation + Delta-G solvation = 20.674636 kcal Electronic energy + Delta-G solvation = -16619.508774 eV Core-core repulsion = 13838.892331 eV Total energy + Delta-G solvation = -2780.616444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76453 -38.58609 -36.59654 -34.55640 -33.36438 -30.67190 -29.29502 -26.79411 -25.93177 -25.15774 -21.73511 -21.31598 -19.87028 -18.78727 -18.03370 -16.65036 -15.81598 -15.56666 -15.23078 -15.19776 -14.68326 -14.31844 -13.74007 -13.38194 -12.97241 -12.77959 -12.42434 -12.24122 -11.82430 -11.54730 -11.35029 -11.10324 -10.98217 -10.82676 -10.69163 -10.35925 -10.14909 -9.72504 -9.40939 -9.26063 -8.24923 -7.54100 -7.29133 -5.99864 -4.83494 1.98544 2.59467 2.70269 2.86651 2.89651 3.13643 3.63482 4.07770 4.24581 4.59354 4.65115 4.98583 5.20580 5.34202 5.48236 5.56320 5.66207 5.73601 5.98230 6.07805 6.13595 6.27138 6.41452 6.60682 6.66413 6.74170 6.78716 6.85277 7.36201 7.59941 7.64277 7.72551 7.93606 8.21081 8.27707 8.76407 8.88317 9.68659 9.71822 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.055185 B = 0.004069 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.264644 B = 6880.245097 C = 7192.203546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.077 3.923 3 Si 0.926 3.074 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.469 4.469 8 H 0.102 0.898 9 C 0.332 3.668 10 C -0.354 4.354 11 C 0.283 3.717 12 N -0.672 5.672 13 C 0.074 3.926 14 C -0.088 4.088 15 C -0.174 4.174 16 C 0.355 3.645 17 O -0.444 6.444 18 C -0.193 4.193 19 C -0.305 4.305 20 C 0.127 3.873 21 N -0.600 5.600 22 H 0.414 0.586 23 H 0.292 0.708 24 H 0.114 0.886 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 -2.718 2.808 4.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.141 4.141 3 Si 0.750 3.250 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.502 4.502 8 H 0.120 0.880 9 C 0.224 3.776 10 C -0.383 4.383 11 C 0.121 3.879 12 N -0.398 5.398 13 C -0.057 4.057 14 C -0.107 4.107 15 C -0.212 4.212 16 C 0.230 3.770 17 O -0.317 6.317 18 C -0.231 4.231 19 C -0.335 4.335 20 C -0.003 4.003 21 N -0.210 5.210 22 H 0.254 0.746 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.106 -3.649 2.538 4.919 hybrid contribution -0.881 1.164 0.578 1.570 sum -2.987 -2.485 3.115 4.980 Atomic orbital electron populations 1.69285 1.07746 1.30909 1.36882 1.26169 0.94995 1.02315 0.90644 0.86035 0.79894 0.78562 0.80543 1.18380 1.20136 1.18454 1.19488 0.97623 0.89104 1.43997 0.87992 1.17649 0.81418 0.94367 0.84208 1.20286 1.09387 0.88775 1.19881 1.20278 0.87771 0.92940 0.86916 1.73405 1.31720 0.96756 1.37907 1.21673 0.94604 0.93649 0.95769 1.22369 0.95833 0.93121 0.99414 1.24033 1.02170 0.94105 1.00909 1.26099 0.90672 0.82439 0.77773 1.90369 1.70848 1.21554 1.48947 1.24164 0.98463 0.96692 1.03776 1.22301 1.04011 0.96074 1.11114 1.21269 0.95019 0.87220 0.96828 1.42122 1.24288 1.09003 1.45603 0.74610 0.89632 0.86838 0.95111 0.93285 0.89244 0.86755 0.89332 0.89608 0.86793 0.86471 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -17.61 11.10 55.57 0.62 -16.99 16 2 C 0.08 1.63 5.24 -17.29 -0.09 1.54 16 3 Si 0.93 16.15 29.58 -169.99 -5.03 11.12 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.28 -4.71 7.11 56.52 0.40 -4.31 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.10 16 7 C -0.47 -10.88 9.04 -38.06 -0.34 -11.22 16 8 H 0.10 2.30 7.88 -52.48 -0.41 1.88 16 9 C 0.33 7.92 6.33 -84.16 -0.53 7.39 16 10 C -0.35 -8.80 9.83 -37.83 -0.37 -9.17 16 11 C 0.28 6.70 6.80 -82.74 -0.56 6.13 16 12 N -0.67 -15.39 10.62 -57.24 -0.61 -16.00 16 13 C 0.07 1.36 6.06 -4.05 -0.02 1.34 16 14 C -0.09 -1.37 3.98 -89.83 -0.36 -1.73 16 15 C -0.17 -2.49 7.62 -26.92 -0.21 -2.70 16 16 C 0.35 5.10 9.14 -28.17 -0.26 4.85 16 17 O -0.44 -7.63 17.99 6.00 0.11 -7.52 16 18 C -0.19 -2.42 7.62 -27.02 -0.21 -2.62 16 19 C -0.30 -6.23 9.35 -37.43 -0.35 -6.58 16 20 C 0.13 2.39 11.15 -16.87 -0.19 2.21 16 21 N -0.60 -12.71 4.86 -10.83 -0.05 -12.76 16 22 H 0.41 8.39 6.46 -40.82 -0.26 8.13 16 23 H 0.29 5.70 8.29 -40.82 -0.34 5.36 16 24 H 0.11 2.89 8.06 -52.49 -0.42 2.46 16 25 H 0.03 0.55 5.31 -51.93 -0.28 0.28 16 26 H 0.05 0.86 7.87 -51.93 -0.41 0.45 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.11 1.51 7.92 -51.93 -0.41 1.09 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.12 2.14 5.98 -52.49 -0.31 1.83 16 33 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 285.95 15.07 4.31 4.31 Total: -1.00 -26.82 285.95 -7.90 -34.72 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -3.75 Total: 13.68 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -3.49 Total: -10.56 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.04 Total: -45.75 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.11 Total: -7.52 kcal Atomic # 14 Polarization: 16.15 SS G_CDS: -5.03 Total: 11.12 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.82 -7.90 -34.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168398943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.398 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds