Wall clock time and date at job start Sun Mar 29 2020 22:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47095 * 269.99897 * 3 2 1 5 5 H 1.48492 * 109.47348 * 30.00034 * 3 2 1 6 6 H 1.48500 * 109.47436 * 150.00029 * 3 2 1 7 7 C 1.37876 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99862 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00148 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47453 * 179.97438 * 11 10 9 13 13 C 1.39618 * 120.00305 * 179.97438 * 12 11 10 14 14 C 1.38422 * 120.20376 * 359.97438 * 13 12 11 15 15 C 1.38574 * 120.33509 * 179.74169 * 14 13 12 16 16 C 1.37968 * 120.54012 * 0.55767 * 15 14 13 17 17 C 1.38766 * 120.02076 * 359.44050 * 16 15 14 18 18 O 1.35120 * 133.89252 * 180.28070 * 17 16 15 19 19 C 1.34294 * 108.14988 * 180.02562 * 18 17 16 20 20 N 1.29876 * 110.25030 * 359.97438 * 19 18 17 21 21 C 1.36042 * 108.80098 * 0.02562 * 20 19 18 22 22 H 0.97003 * 119.99829 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46631 * 60.00070 * 9 7 2 24 24 H 1.08997 * 109.47310 * 300.00316 * 9 7 2 25 25 H 1.09008 * 109.46755 * 60.00314 * 10 9 7 26 26 H 1.09002 * 109.47641 * 300.00617 * 10 9 7 27 27 H 1.09000 * 109.47141 * 60.00153 * 11 10 9 28 28 H 1.08997 * 109.47279 * 300.00340 * 11 10 9 29 29 H 0.97003 * 119.99780 * 0.02562 * 12 11 10 30 30 H 1.08008 * 119.82965 * 0.02562 * 14 13 12 31 31 H 1.07995 * 119.73154 * 180.29687 * 15 14 13 32 32 H 1.08002 * 119.99181 * 179.72437 * 16 15 14 33 33 H 1.07996 * 124.87267 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5515 -2.6366 0.0014 12 7 6.0398 -4.0178 0.0034 13 6 7.4125 -4.2730 0.0033 14 6 8.3158 -3.2241 0.0007 15 6 9.6788 -3.4742 0.0060 16 6 10.1539 -4.7695 0.0022 17 6 9.2649 -5.8351 0.0048 18 8 9.4125 -7.1782 0.0073 19 6 8.1898 -7.7334 0.0086 20 7 7.2767 -6.8098 0.0077 21 6 7.8843 -5.5926 0.0051 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8904 25 1 3.6579 -3.1514 -0.8880 26 1 3.6585 -3.1495 0.8920 27 1 5.9148 -2.1220 0.8909 28 1 5.9149 -2.1236 -0.8890 29 1 5.4095 -4.7551 0.0040 30 1 7.9564 -2.2056 -0.0007 31 1 10.3748 -2.6485 0.0088 32 1 11.2180 -4.9543 0.0019 33 1 7.9938 -8.7955 0.0102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:57 Heat of formation + Delta-G solvation = 27.629345 kcal Electronic energy + Delta-G solvation = -16533.819049 eV Core-core repulsion = 13753.504184 eV Total energy + Delta-G solvation = -2780.314865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.19467 -38.68568 -35.99456 -34.70813 -33.54258 -31.71614 -29.90061 -28.99415 -26.56971 -23.90862 -23.44264 -22.32067 -21.14017 -20.31924 -17.99933 -17.81072 -16.76183 -16.67401 -16.28196 -15.33516 -15.01858 -14.99904 -14.19216 -13.80139 -13.50002 -13.11480 -12.72237 -12.33848 -12.04636 -11.90833 -11.79678 -11.51501 -11.05799 -10.97350 -10.62699 -10.17976 -9.97973 -9.75773 -9.70243 -9.26537 -8.80320 -8.58726 -7.27260 -6.08764 -4.07836 0.83712 1.32992 2.43975 2.59028 3.27507 3.35168 3.37564 3.42557 3.69093 3.88913 4.40807 4.71972 4.83267 5.08073 5.15716 5.24717 5.30077 5.43099 5.53361 5.68896 5.85995 5.90459 6.11610 6.17629 6.35441 6.37483 6.39771 6.59843 6.72298 7.15905 7.21043 7.30957 7.57149 7.72150 7.75749 8.47984 8.95437 9.52827 11.04617 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.043679 B = 0.003996 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.879429 B = 7005.506111 C = 7620.636714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.723 5.723 13 C 0.292 3.708 14 C -0.227 4.227 15 C -0.028 4.028 16 C -0.179 4.179 17 C 0.062 3.938 18 O -0.222 6.222 19 C 0.197 3.803 20 N -0.467 5.467 21 C -0.061 4.061 22 H 0.264 0.736 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.408 0.592 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.636 -10.655 0.036 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.346 5.346 13 C 0.181 3.819 14 C -0.252 4.252 15 C -0.047 4.047 16 C -0.200 4.200 17 C 0.011 3.989 18 O -0.113 6.113 19 C -0.035 4.035 20 N -0.195 5.195 21 C -0.175 4.175 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 19.691 -10.394 0.040 22.265 hybrid contribution 0.670 0.516 -0.021 0.846 sum 20.361 -9.877 0.019 22.630 Atomic orbital electron populations 1.69915 1.06336 1.26974 1.50883 1.25037 0.94756 0.99235 0.94467 0.86758 0.80339 0.83533 0.78537 1.20238 1.21335 1.18972 1.21099 0.89308 0.94566 1.51161 0.91016 1.19495 0.97390 0.91311 0.96536 1.21685 0.90442 1.01048 1.02000 1.21773 0.96915 0.81225 1.01073 1.45147 1.02845 1.09117 1.77480 1.17101 0.85150 0.89017 0.90625 1.20529 0.92423 0.98096 1.14192 1.20713 0.94856 0.95189 0.93969 1.19503 0.98224 0.88755 1.13560 1.20096 0.95348 0.81855 1.01594 1.84514 1.34098 1.18080 1.74648 1.27945 0.75902 1.00448 0.99219 1.70373 1.33423 0.98106 1.17573 1.19233 0.90729 0.91993 1.15586 0.92661 0.96336 0.96767 0.92034 0.92011 0.91991 0.91993 0.75652 0.84580 0.84542 0.85440 0.73383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -2.14 5.27 -26.74 -0.14 -2.28 16 11 C 0.11 1.75 4.91 -4.05 -0.02 1.73 16 12 N -0.72 -10.77 5.73 -58.45 -0.34 -11.10 16 13 C 0.29 4.23 6.68 -83.53 -0.56 3.67 16 14 C -0.23 -2.84 9.30 -39.39 -0.37 -3.20 16 15 C -0.03 -0.30 10.02 -39.56 -0.40 -0.69 16 16 C -0.18 -1.99 10.06 -39.49 -0.40 -2.39 16 17 C 0.06 0.83 7.43 -38.66 -0.29 0.54 16 18 O -0.22 -2.63 10.78 3.43 0.04 -2.59 16 19 C 0.20 2.01 13.13 51.94 0.68 2.69 16 20 N -0.47 -6.47 11.33 -12.44 -0.14 -6.61 16 21 C -0.06 -0.89 7.09 -84.56 -0.60 -1.49 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 24 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 25 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 28 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 29 H 0.41 6.12 8.49 -40.82 -0.35 5.78 16 30 H 0.14 1.56 6.72 -52.48 -0.35 1.21 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.25 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -32.66 285.72 -6.65 -39.31 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.99 Total: 1.95 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -2.63 Total: -15.01 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.30 Total: -44.65 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.66 -6.65 -39.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.938 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds