Wall clock time and date at job start Sun Mar 29 2020 22:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47095 * 269.99897 * 3 2 1 5 5 H 1.48492 * 109.47348 * 30.00034 * 3 2 1 6 6 H 1.48500 * 109.47436 * 150.00029 * 3 2 1 7 7 C 1.37876 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99862 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00148 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47453 * 179.97438 * 11 10 9 13 13 C 1.39618 * 120.00305 * 179.97438 * 12 11 10 14 14 C 1.38422 * 120.20376 * 359.97438 * 13 12 11 15 15 C 1.38574 * 120.33509 * 179.74169 * 14 13 12 16 16 C 1.37968 * 120.54012 * 0.55767 * 15 14 13 17 17 C 1.38766 * 120.02076 * 359.44050 * 16 15 14 18 18 O 1.35120 * 133.89252 * 180.28070 * 17 16 15 19 19 C 1.34294 * 108.14988 * 180.02562 * 18 17 16 20 20 N 1.29876 * 110.25030 * 359.97438 * 19 18 17 21 21 C 1.36042 * 108.80098 * 0.02562 * 20 19 18 22 22 H 0.97003 * 119.99829 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46631 * 60.00070 * 9 7 2 24 24 H 1.08997 * 109.47310 * 300.00316 * 9 7 2 25 25 H 1.09008 * 109.46755 * 60.00314 * 10 9 7 26 26 H 1.09002 * 109.47641 * 300.00617 * 10 9 7 27 27 H 1.09000 * 109.47141 * 60.00153 * 11 10 9 28 28 H 1.08997 * 109.47279 * 300.00340 * 11 10 9 29 29 H 0.97003 * 119.99780 * 0.02562 * 12 11 10 30 30 H 1.08008 * 119.82965 * 0.02562 * 14 13 12 31 31 H 1.07995 * 119.73154 * 180.29687 * 15 14 13 32 32 H 1.08002 * 119.99181 * 179.72437 * 16 15 14 33 33 H 1.07996 * 124.87267 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5515 -2.6366 0.0014 12 7 6.0398 -4.0178 0.0034 13 6 7.4125 -4.2730 0.0033 14 6 8.3158 -3.2241 0.0007 15 6 9.6788 -3.4742 0.0060 16 6 10.1539 -4.7695 0.0022 17 6 9.2649 -5.8351 0.0048 18 8 9.4125 -7.1782 0.0073 19 6 8.1898 -7.7334 0.0086 20 7 7.2767 -6.8098 0.0077 21 6 7.8843 -5.5926 0.0051 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8904 25 1 3.6579 -3.1514 -0.8880 26 1 3.6585 -3.1495 0.8920 27 1 5.9148 -2.1220 0.8909 28 1 5.9149 -2.1236 -0.8890 29 1 5.4095 -4.7551 0.0040 30 1 7.9564 -2.2056 -0.0007 31 1 10.3748 -2.6485 0.0088 32 1 11.2180 -4.9543 0.0019 33 1 7.9938 -8.7955 0.0102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430943.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:56 Heat of formation + Delta-G solvation = 3.429885 kcal Electronic energy + Delta-G solvation = -16534.868417 eV Core-core repulsion = 13753.504184 eV Total energy + Delta-G solvation = -2781.364232 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.07387 -39.65387 -37.20363 -35.69819 -35.23020 -33.49921 -30.78141 -30.29853 -28.04165 -25.16613 -24.34753 -23.62156 -22.13225 -21.93060 -19.10775 -18.80041 -18.62672 -17.58150 -17.19069 -16.45844 -16.38271 -16.27093 -15.76954 -14.79122 -14.66491 -14.43193 -14.41288 -13.81018 -13.36327 -13.12491 -12.86230 -12.70181 -12.44959 -12.41493 -11.87331 -11.75257 -11.64927 -11.46884 -11.34303 -10.84033 -10.76828 -9.69407 -8.29839 -8.27159 -6.35309 -0.01997 0.38823 1.38189 1.40388 1.52271 1.59227 1.77920 2.33724 2.37166 2.77076 3.05841 3.13882 3.79775 4.00863 4.07107 4.17694 4.23177 4.37832 4.46727 4.51059 4.76049 4.87963 4.90833 4.98193 5.04225 5.27276 5.35464 5.42317 5.50929 5.53891 5.63294 5.74970 6.16750 6.27322 6.57622 6.72648 6.74197 7.29598 8.87204 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.043679 B = 0.003996 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.879429 B = 7005.506111 C = 7620.636714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.538 4.538 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.104 4.104 11 C 0.130 3.870 12 N -0.733 5.733 13 C 0.261 3.739 14 C -0.228 4.228 15 C -0.025 4.025 16 C -0.173 4.173 17 C 0.040 3.960 18 O -0.225 6.225 19 C 0.219 3.781 20 N -0.513 5.513 21 C -0.085 4.085 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.402 0.598 30 H 0.146 0.854 31 H 0.175 0.825 32 H 0.154 0.846 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.045 -9.969 0.034 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.045 4.045 10 C -0.142 4.142 11 C 0.007 3.993 12 N -0.357 5.357 13 C 0.153 3.847 14 C -0.253 4.253 15 C -0.044 4.044 16 C -0.194 4.194 17 C -0.012 4.012 18 O -0.117 6.117 19 C -0.013 4.013 20 N -0.241 5.241 21 C -0.199 4.199 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.237 0.763 30 H 0.164 0.836 31 H 0.192 0.808 32 H 0.172 0.828 33 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges 23.144 -9.725 0.038 25.104 hybrid contribution -0.381 0.117 -0.022 0.399 sum 22.762 -9.607 0.016 24.707 Atomic orbital electron populations 1.70086 1.08541 1.28276 1.52576 1.26107 0.95670 1.03891 0.93933 0.85576 0.79651 0.77610 0.79328 1.19022 1.21208 1.16236 1.21501 0.92313 0.93040 1.50721 0.95462 1.19432 0.93717 0.94038 0.97285 1.21469 0.93264 0.98379 1.01120 1.21479 0.93883 0.82006 1.01961 1.44966 1.03271 1.08367 1.79145 1.17387 0.84960 0.89814 0.92551 1.20840 0.93204 0.98041 1.13242 1.21149 0.94587 0.96094 0.92550 1.19971 0.99350 0.88483 1.11594 1.20495 0.95285 0.82745 1.02625 1.84529 1.34770 1.17642 1.74751 1.29108 0.74820 1.01837 0.95493 1.70373 1.34878 0.98671 1.20159 1.19529 0.91720 0.92409 1.16223 0.92479 0.95371 0.95491 0.93009 0.93023 0.91091 0.91020 0.76327 0.83622 0.80806 0.82848 0.68511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.01 16 2 C 0.00 0.03 5.47 84.65 0.46 0.49 16 3 Si 0.96 43.40 27.47 68.60 1.88 45.29 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 7 C -0.54 -31.06 9.66 25.60 0.25 -30.81 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.31 4.04 29.85 0.12 -0.19 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.13 3.87 4.91 86.38 0.42 4.29 16 12 N -0.73 -21.80 5.73 -338.83 -1.94 -23.74 16 13 C 0.26 7.40 6.68 38.41 0.26 7.66 16 14 C -0.23 -5.22 9.30 22.39 0.21 -5.02 16 15 C -0.03 -0.45 10.02 22.29 0.22 -0.22 16 16 C -0.17 -3.38 10.06 22.33 0.22 -3.15 16 17 C 0.04 0.99 7.43 22.87 0.17 1.16 16 18 O -0.23 -4.93 10.78 -10.63 -0.11 -5.04 16 19 C 0.22 4.08 13.13 130.53 1.71 5.79 16 20 N -0.51 -14.00 11.33 -308.06 -3.49 -17.50 16 21 C -0.09 -2.46 7.09 39.42 0.28 -2.18 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 24 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 25 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.97 7.95 -2.39 -0.02 1.95 16 28 H 0.07 1.98 7.95 -2.39 -0.02 1.96 16 29 H 0.40 12.49 8.49 -92.71 -0.79 11.71 16 30 H 0.15 2.95 6.72 -2.91 -0.02 2.93 16 31 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.30 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -73.54 285.72 1.41 -72.13 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.28 Total: 14.82 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 4.49 Total: -25.96 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -5.13 Total: -101.24 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.11 Total: -5.04 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -73.54 1.41 -72.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430943.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.558 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds