Wall clock time and date at job start Sun Mar 29 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.39892 * 119.99623 * 180.02562 * 12 11 10 14 14 C 1.39316 * 119.87345 * 0.02562 * 13 12 11 15 15 C 1.37828 * 120.40862 * 179.97438 * 14 13 12 16 16 C 1.38690 * 119.97121 * 0.02562 * 15 14 13 17 17 O 1.35219 * 133.84307 * 180.02562 * 16 15 14 18 18 C 1.34202 * 108.15811 * 179.97438 * 17 16 15 19 19 N 1.29918 * 110.29591 * 0.02562 * 18 17 16 20 20 C 1.36070 * 108.80721 * 359.97438 * 19 18 17 21 21 C 1.38308 * 119.86709 * 179.72900 * 13 12 11 22 22 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 25 25 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 26 26 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 27 27 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 28 28 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 29 29 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 30 30 H 1.08000 * 119.79728 * 359.97438 * 14 13 12 31 31 H 1.07996 * 120.01568 * 180.02562 * 15 14 13 32 32 H 1.08001 * 124.85268 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.16734 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9657 -7.4196 0.0019 14 6 0.5954 -7.6710 0.0009 15 6 0.1238 -8.9661 0.0005 16 6 1.0156 -10.0282 0.0016 17 8 0.8710 -11.3727 0.0011 18 6 2.0941 -11.9249 0.0022 19 7 3.0062 -10.9997 0.0040 20 6 2.3970 -9.7830 0.0034 21 6 2.8668 -8.4688 -0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 0.8537 -5.0446 0.8914 28 1 0.8531 -5.0451 -0.8886 29 1 3.3857 -5.9235 0.0014 30 1 -0.1016 -6.8461 0.0004 31 1 -0.9398 -9.1537 -0.0007 32 1 2.2920 -12.9866 0.0026 33 1 3.9288 -8.2721 -0.0077 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:36 Heat of formation + Delta-G solvation = 26.355810 kcal Electronic energy + Delta-G solvation = -16278.338734 eV Core-core repulsion = 13497.968645 eV Total energy + Delta-G solvation = -2780.370089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.14221 -38.76932 -35.75383 -34.62655 -33.46791 -31.60072 -30.10247 -28.68970 -26.24076 -23.99650 -23.28993 -22.05871 -21.61307 -20.39464 -18.02308 -17.52073 -16.68870 -16.61823 -16.32892 -14.98738 -14.87402 -14.52906 -14.22051 -14.16080 -13.55809 -12.98185 -12.81690 -12.28873 -11.91182 -11.86608 -11.55785 -11.47233 -10.94881 -10.75667 -10.60734 -10.47976 -10.07804 -9.68475 -9.52882 -9.18165 -8.56424 -8.41731 -7.32560 -6.06830 -4.09649 0.67988 1.44811 2.44905 2.61497 3.28180 3.34708 3.37421 3.46772 3.72740 4.03042 4.41021 4.57325 5.01435 5.08922 5.16254 5.29419 5.31660 5.55468 5.65613 5.65775 6.02670 6.08820 6.10122 6.22890 6.31732 6.34665 6.52143 6.62656 6.92111 7.38511 7.56370 7.57029 7.69238 7.83446 7.91736 8.33481 8.96854 9.54970 11.04505 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.076994 B = 0.003232 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.575750 B = 8661.015672 C = 8998.841943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.738 5.738 13 C 0.228 3.772 14 C -0.155 4.155 15 C -0.047 4.047 16 C -0.053 4.053 17 O -0.221 6.221 18 C 0.225 3.775 19 N -0.494 5.494 20 C 0.067 3.933 21 C -0.164 4.164 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.401 0.599 30 H 0.143 0.857 31 H 0.134 0.866 32 H 0.251 0.749 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -20.418 -0.002 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.366 5.366 13 C 0.120 3.880 14 C -0.177 4.177 15 C -0.067 4.067 16 C -0.103 4.103 17 O -0.112 6.112 18 C -0.006 4.006 19 N -0.224 5.224 20 C -0.045 4.045 21 C -0.189 4.189 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.236 0.764 30 H 0.161 0.839 31 H 0.152 0.848 32 H 0.266 0.734 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.885 -20.195 0.005 20.283 hybrid contribution 0.155 0.954 -0.010 0.966 sum 2.039 -19.241 -0.005 19.349 Atomic orbital electron populations 1.69955 1.06064 1.26747 1.50602 1.25024 0.94867 0.99329 0.95198 0.86577 0.79836 0.83361 0.78142 1.20626 1.21171 1.19866 1.21209 0.93043 0.90954 1.50946 0.92647 1.19026 0.93818 0.90927 0.97522 1.21856 0.99816 0.93158 1.01050 1.21683 0.92202 0.85773 1.00819 1.45062 1.09306 1.01715 1.80536 1.17587 0.92202 0.85187 0.92993 1.20689 0.94134 0.96115 1.06768 1.19597 0.98450 0.88341 1.00269 1.20076 0.96287 0.81748 1.12229 1.84471 1.33578 1.18438 1.74749 1.28148 0.76380 1.00641 0.95434 1.70597 1.33193 0.98348 1.20291 1.19395 0.89714 0.92632 1.02750 1.19428 0.99449 0.87771 1.12274 0.92902 0.96331 0.96313 0.92675 0.92672 0.92306 0.92305 0.76431 0.83928 0.84808 0.73365 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.84 4.91 -4.04 -0.02 1.82 16 12 N -0.74 -10.10 5.74 -58.62 -0.34 -10.44 16 13 C 0.23 3.09 6.65 -83.75 -0.56 2.54 16 14 C -0.16 -1.97 9.29 -39.33 -0.37 -2.33 16 15 C -0.05 -0.56 10.05 -39.56 -0.40 -0.96 16 16 C -0.05 -0.71 7.43 -38.64 -0.29 -0.99 16 17 O -0.22 -2.59 10.78 3.39 0.04 -2.55 16 18 C 0.23 2.14 13.12 51.95 0.68 2.82 16 19 N -0.49 -6.52 11.34 -12.55 -0.14 -6.66 16 20 C 0.07 0.95 7.23 -84.71 -0.61 0.34 16 21 C -0.16 -2.25 9.93 -39.06 -0.39 -2.64 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 28 H 0.06 0.91 7.94 -51.93 -0.41 0.50 16 29 H 0.40 5.00 8.48 -40.82 -0.35 4.66 16 30 H 0.14 1.66 6.70 -52.49 -0.35 1.31 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.25 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 289.27 15.07 4.36 4.36 Total: -1.00 -31.92 289.27 -7.03 -38.94 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.02 Total: 0.22 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.64 Total: -14.54 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.26 Total: -42.67 kcal Atomic # 8 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.92 -7.03 -38.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.299 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds