Wall clock time and date at job start Sun Mar 29 2020 22:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.39892 * 119.99623 * 180.02562 * 12 11 10 14 14 C 1.39316 * 119.87345 * 0.02562 * 13 12 11 15 15 C 1.37828 * 120.40862 * 179.97438 * 14 13 12 16 16 C 1.38690 * 119.97121 * 0.02562 * 15 14 13 17 17 O 1.35219 * 133.84307 * 180.02562 * 16 15 14 18 18 C 1.34202 * 108.15811 * 179.97438 * 17 16 15 19 19 N 1.29918 * 110.29591 * 0.02562 * 18 17 16 20 20 C 1.36070 * 108.80721 * 359.97438 * 19 18 17 21 21 C 1.38308 * 119.86709 * 179.72900 * 13 12 11 22 22 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 24 24 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 25 25 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 26 26 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 27 27 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 28 28 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 29 29 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 30 30 H 1.08000 * 119.79728 * 359.97438 * 14 13 12 31 31 H 1.07996 * 120.01568 * 180.02562 * 15 14 13 32 32 H 1.08001 * 124.85268 * 179.97438 * 18 17 16 33 33 H 1.08002 * 120.16734 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9657 -7.4196 0.0019 14 6 0.5954 -7.6710 0.0009 15 6 0.1238 -8.9661 0.0005 16 6 1.0156 -10.0282 0.0016 17 8 0.8710 -11.3727 0.0011 18 6 2.0941 -11.9249 0.0022 19 7 3.0062 -10.9997 0.0040 20 6 2.3970 -9.7830 0.0034 21 6 2.8668 -8.4688 -0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6045 -0.8894 27 1 0.8537 -5.0446 0.8914 28 1 0.8531 -5.0451 -0.8886 29 1 3.3857 -5.9235 0.0014 30 1 -0.1016 -6.8461 0.0004 31 1 -0.9398 -9.1537 -0.0007 32 1 2.2920 -12.9866 0.0026 33 1 3.9288 -8.2721 -0.0077 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431189.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:35 Heat of formation + Delta-G solvation = 3.947611 kcal Electronic energy + Delta-G solvation = -16279.310427 eV Core-core repulsion = 13497.968645 eV Total energy + Delta-G solvation = -2781.341782 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.03773 -39.79496 -37.04229 -35.65724 -35.15424 -33.23786 -31.17086 -29.90084 -27.85214 -25.12665 -24.68086 -23.04043 -22.74844 -21.95886 -19.01269 -18.63066 -18.25794 -17.62705 -17.52746 -16.53492 -16.27967 -16.02887 -15.20509 -15.09289 -14.58955 -14.32016 -14.29786 -13.74176 -13.61831 -13.28085 -12.77762 -12.64790 -12.46324 -12.45341 -12.27046 -11.69854 -11.45779 -11.41011 -11.18240 -10.86475 -10.54731 -9.51563 -8.38380 -8.20349 -6.30661 -0.21831 0.44420 1.41285 1.41708 1.52730 1.58075 1.77952 2.35993 2.45191 2.72965 3.13678 3.26583 3.64717 4.06489 4.12709 4.19826 4.26768 4.29824 4.40195 4.61662 4.74728 4.99460 5.02293 5.12336 5.14859 5.19686 5.26529 5.41230 5.46950 5.52666 5.73822 5.85228 6.20438 6.31366 6.67133 6.79216 6.86711 7.38637 8.91386 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.076994 B = 0.003232 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.575750 B = 8661.015672 C = 8998.841943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.106 4.106 11 C 0.134 3.866 12 N -0.737 5.737 13 C 0.221 3.779 14 C -0.167 4.167 15 C -0.041 4.041 16 C -0.070 4.070 17 O -0.224 6.224 18 C 0.251 3.749 19 N -0.534 5.534 20 C 0.047 3.953 21 C -0.177 4.177 22 H 0.264 0.736 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.406 0.594 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.307 0.693 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 -21.600 -0.008 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.144 4.144 11 C 0.010 3.990 12 N -0.366 5.366 13 C 0.114 3.886 14 C -0.189 4.189 15 C -0.060 4.060 16 C -0.121 4.121 17 O -0.116 6.116 18 C 0.021 3.979 19 N -0.265 5.265 20 C -0.064 4.064 21 C -0.202 4.202 22 H 0.072 0.928 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.242 0.758 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.321 0.679 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.432 -21.397 -0.002 21.535 hybrid contribution -0.020 1.165 -0.009 1.165 sum 2.412 -20.232 -0.010 20.376 Atomic orbital electron populations 1.70079 1.07687 1.27776 1.51646 1.25941 0.95754 1.03243 0.94810 0.85489 0.78697 0.78684 0.78440 1.19869 1.20834 1.18833 1.21699 0.93586 0.92426 1.50520 0.92198 1.18920 0.94323 0.92464 0.95410 1.21576 0.98614 0.92807 1.01367 1.21344 0.91913 0.84784 1.00989 1.44830 1.09226 1.01381 1.81134 1.17666 0.92724 0.84798 0.93363 1.20847 0.93907 0.96834 1.07271 1.19879 0.99661 0.87746 0.98711 1.20319 0.96206 0.82690 1.12867 1.84493 1.34601 1.17673 1.74805 1.29439 0.74956 1.02171 0.91332 1.70602 1.34506 0.98569 1.22794 1.19676 0.90559 0.93207 1.02974 1.19515 0.99744 0.88000 1.12921 0.92756 0.98430 0.98415 0.92326 0.92299 0.92222 0.92213 0.75802 0.83185 0.82270 0.67883 0.84880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.11 -3.95 5.27 30.60 0.16 -3.79 16 11 C 0.13 4.09 4.91 86.38 0.42 4.51 16 12 N -0.74 -19.72 5.74 -339.39 -1.95 -21.66 16 13 C 0.22 5.90 6.65 38.13 0.25 6.16 16 14 C -0.17 -4.09 9.29 22.43 0.21 -3.88 16 15 C -0.04 -0.92 10.05 22.28 0.22 -0.70 16 16 C -0.07 -1.79 7.43 22.88 0.17 -1.62 16 17 O -0.22 -4.75 10.78 -10.79 -0.12 -4.86 16 18 C 0.25 4.08 13.12 130.53 1.71 5.80 16 19 N -0.53 -13.37 11.34 -308.46 -3.50 -16.86 16 20 C 0.05 1.31 7.23 39.31 0.28 1.59 16 21 C -0.18 -4.83 9.93 22.61 0.22 -4.61 16 22 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 23 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.82 7.94 -2.39 -0.02 1.80 16 28 H 0.06 1.82 7.94 -2.39 -0.02 1.80 16 29 H 0.41 9.88 8.48 -92.71 -0.79 9.10 16 30 H 0.15 3.37 6.70 -2.91 -0.02 3.35 16 31 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.31 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -69.14 289.27 1.59 -67.55 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.34 Total: 10.01 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.51 Total: -24.42 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -5.16 Total: -93.79 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.12 Total: -4.86 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.14 1.59 -67.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431189.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.497 kcal (2) G-P(sol) polarization free energy of solvation -69.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds