Wall clock time and date at job start Sun Mar 29 2020 22:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48504 * 109.47129 * 269.99796 * 3 2 1 5 5 H 1.48498 * 109.47037 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.46994 * 149.99864 * 3 2 1 7 7 C 1.37882 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46586 * 179.97438 * 11 10 9 13 13 C 1.39821 * 119.99826 * 179.97438 * 12 11 10 14 14 C 1.39292 * 120.23190 * 359.97438 * 13 12 11 15 15 N 1.31561 * 121.05629 * 180.02562 * 14 13 12 16 16 C 1.32785 * 121.46091 * 359.97438 * 15 14 13 17 17 C 1.46833 * 133.96244 * 180.02562 * 16 15 14 18 18 C 1.34044 * 106.27649 * 179.97438 * 17 16 15 19 19 O 1.34438 * 110.15177 * 0.02562 * 18 17 16 20 20 C 1.34721 * 110.80797 * 0.02562 * 19 18 17 21 21 C 1.38966 * 120.23782 * 180.02562 * 13 12 11 22 22 H 0.97002 * 119.99678 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47253 * 60.00171 * 9 7 2 24 24 H 1.09008 * 109.47491 * 300.00309 * 9 7 2 25 25 H 1.08996 * 109.46891 * 59.99949 * 10 9 7 26 26 H 1.09000 * 109.46707 * 299.99612 * 10 9 7 27 27 H 1.08998 * 109.46875 * 59.99657 * 11 10 9 28 28 H 1.09000 * 109.47007 * 299.99340 * 11 10 9 29 29 H 0.97000 * 120.00647 * 0.02562 * 12 11 10 30 30 H 1.07993 * 119.47119 * 0.04113 * 14 13 12 31 31 H 1.07997 * 126.86345 * 0.26125 * 17 16 15 32 32 H 1.07995 * 124.91986 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.86402 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9661 -7.4188 -0.0019 14 6 0.5976 -7.6789 -0.0009 15 7 0.1413 -8.9128 -0.0005 16 6 0.9633 -9.9557 -0.0015 17 6 0.7641 -11.4105 -0.0019 18 6 1.9880 -11.9572 -0.0036 19 8 2.9257 -10.9938 -0.0038 20 6 2.3569 -9.7725 -0.0016 21 6 2.8647 -8.4788 -0.0020 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8886 29 1 3.3858 -5.9234 -0.0014 30 1 -0.0999 -6.8545 -0.0007 31 1 -0.1798 -11.9352 -0.0053 32 1 2.1913 -13.0178 -0.0047 33 1 3.9301 -8.3019 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168431232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:07 Heat of formation + Delta-G solvation = 27.661740 kcal Electronic energy + Delta-G solvation = -16282.096367 eV Core-core repulsion = 13501.782907 eV Total energy + Delta-G solvation = -2780.313460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55137 -39.26729 -36.35740 -33.92309 -32.58028 -31.62923 -31.02105 -28.55585 -26.29470 -24.48859 -23.16173 -22.13478 -21.17676 -20.47095 -18.07194 -17.53388 -16.62948 -16.31009 -16.27258 -15.07337 -14.98074 -14.95451 -14.48717 -13.84993 -13.45706 -13.03076 -12.94717 -12.62058 -12.22493 -12.21159 -11.87119 -11.07998 -10.81392 -10.80160 -10.62195 -9.93957 -9.58202 -9.48016 -9.44190 -9.19504 -9.02223 -8.42559 -7.39443 -6.07420 -4.10537 0.91105 1.23559 2.27047 2.54128 3.27647 3.34322 3.36841 3.52459 3.82858 4.09892 4.40258 4.53372 4.78115 4.93151 4.96907 5.28799 5.28905 5.45429 5.59056 5.60120 5.75284 5.89465 5.98293 6.11554 6.29044 6.47515 6.53600 6.88507 6.94859 7.19939 7.55804 7.62152 7.67620 7.90719 7.97108 8.32020 8.95887 9.54182 11.03853 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.077145 B = 0.003250 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.867891 B = 8614.155363 C = 8951.273834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.726 5.726 13 C 0.204 3.796 14 C 0.043 3.957 15 N -0.407 5.407 16 C 0.003 3.997 17 C -0.181 4.181 18 C -0.004 4.004 19 O -0.196 6.196 20 C 0.056 3.944 21 C -0.170 4.170 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.402 0.598 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.210 0.790 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 -20.508 -0.007 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.008 4.008 12 N -0.353 5.353 13 C 0.094 3.906 14 C -0.128 4.128 15 N -0.116 5.116 16 C -0.129 4.129 17 C -0.201 4.201 18 C -0.070 4.070 19 O -0.096 6.096 20 C 0.006 3.994 21 C -0.203 4.203 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.237 0.763 30 H 0.183 0.817 31 H 0.178 0.822 32 H 0.226 0.774 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.361 -20.450 -0.002 20.725 hybrid contribution 1.531 1.128 -0.010 1.901 sum 4.891 -19.323 -0.011 19.932 Atomic orbital electron populations 1.69953 1.06061 1.26780 1.50467 1.25021 0.94864 0.99331 0.95180 0.86580 0.79822 0.83378 0.78143 1.20621 1.21159 1.19882 1.21192 0.93018 0.90931 1.51099 0.92654 1.19032 0.93803 0.90857 0.97635 1.21864 0.99845 0.93015 1.01107 1.21793 0.92164 0.85587 1.01289 1.45067 1.09596 1.01472 1.79165 1.18563 0.93465 0.85574 0.93000 1.22484 0.92015 0.93719 1.04589 1.66886 1.38563 0.97932 1.08178 1.20512 0.88883 0.93744 1.09742 1.22215 0.98950 0.90491 1.08435 1.23889 0.86111 0.93539 1.03505 1.83975 1.35941 1.13010 1.76712 1.20032 0.92546 0.85732 1.01132 1.19478 1.00142 0.86666 1.13985 0.92868 0.96237 0.96240 0.92598 0.92608 0.91873 0.91870 0.76253 0.81728 0.82233 0.77386 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 11 C 0.11 1.73 4.92 -4.04 -0.02 1.71 16 12 N -0.73 -9.53 5.74 -58.47 -0.34 -9.86 16 13 C 0.20 2.78 6.67 -83.55 -0.56 2.23 16 14 C 0.04 0.62 10.47 -17.28 -0.18 0.44 16 15 N -0.41 -6.37 10.40 -9.67 -0.10 -6.47 16 16 C 0.00 0.05 7.54 -83.10 -0.63 -0.58 16 17 C -0.18 -1.98 11.14 -37.58 -0.42 -2.40 16 18 C 0.00 -0.04 11.96 29.26 0.35 0.31 16 19 O -0.20 -2.37 10.58 4.19 0.04 -2.32 16 20 C 0.06 0.77 7.42 -38.43 -0.29 0.49 16 21 C -0.17 -2.21 10.04 -39.04 -0.39 -2.60 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 28 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 29 H 0.40 4.65 8.49 -40.82 -0.35 4.30 16 30 H 0.17 2.20 6.72 -52.49 -0.35 1.84 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -31.39 289.75 -7.16 -38.54 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.03 Total: 0.48 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.82 Total: -15.39 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.30 Total: -41.82 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.39 -7.16 -38.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.205 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds