Wall clock time and date at job start Sun Mar 29 2020 22:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00172 * 2 1 4 4 H 1.48504 * 109.47129 * 269.99796 * 3 2 1 5 5 H 1.48498 * 109.47037 * 29.99969 * 3 2 1 6 6 H 1.48505 * 109.46994 * 149.99864 * 3 2 1 7 7 C 1.37882 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99700 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47087 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46988 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46586 * 179.97438 * 11 10 9 13 13 C 1.39821 * 119.99826 * 179.97438 * 12 11 10 14 14 C 1.39292 * 120.23190 * 359.97438 * 13 12 11 15 15 N 1.31561 * 121.05629 * 180.02562 * 14 13 12 16 16 C 1.32785 * 121.46091 * 359.97438 * 15 14 13 17 17 C 1.46833 * 133.96244 * 180.02562 * 16 15 14 18 18 C 1.34044 * 106.27649 * 179.97438 * 17 16 15 19 19 O 1.34438 * 110.15177 * 0.02562 * 18 17 16 20 20 C 1.34721 * 110.80797 * 0.02562 * 19 18 17 21 21 C 1.38966 * 120.23782 * 180.02562 * 13 12 11 22 22 H 0.97002 * 119.99678 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47253 * 60.00171 * 9 7 2 24 24 H 1.09008 * 109.47491 * 300.00309 * 9 7 2 25 25 H 1.08996 * 109.46891 * 59.99949 * 10 9 7 26 26 H 1.09000 * 109.46707 * 299.99612 * 10 9 7 27 27 H 1.08998 * 109.46875 * 59.99657 * 11 10 9 28 28 H 1.09000 * 109.47007 * 299.99340 * 11 10 9 29 29 H 0.97000 * 120.00647 * 0.02562 * 12 11 10 30 30 H 1.07993 * 119.47119 * 0.04113 * 14 13 12 31 31 H 1.07997 * 126.86345 * 0.26125 * 17 16 15 32 32 H 1.07995 * 124.91986 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.86402 * 359.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9661 -7.4188 -0.0019 14 6 0.5976 -7.6789 -0.0009 15 7 0.1413 -8.9128 -0.0005 16 6 0.9633 -9.9557 -0.0015 17 6 0.7641 -11.4105 -0.0019 18 6 1.9880 -11.9572 -0.0036 19 8 2.9257 -10.9938 -0.0038 20 6 2.3569 -9.7725 -0.0016 21 6 2.8647 -8.4788 -0.0020 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6043 0.8894 26 1 2.8718 -3.6044 -0.8906 27 1 0.8537 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8886 29 1 3.3858 -5.9234 -0.0014 30 1 -0.0999 -6.8545 -0.0007 31 1 -0.1798 -11.9352 -0.0053 32 1 2.1913 -13.0178 -0.0047 33 1 3.9301 -8.3019 -0.0023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168431232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:07 Heat of formation + Delta-G solvation = 7.246608 kcal Electronic energy + Delta-G solvation = -16282.981634 eV Core-core repulsion = 13501.782907 eV Total energy + Delta-G solvation = -2781.198727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.46544 -40.29924 -37.58956 -35.61944 -33.98447 -32.74604 -32.29689 -29.80066 -27.86101 -25.64829 -24.66479 -23.20349 -22.19002 -21.99551 -19.00053 -18.68522 -18.29371 -17.58431 -17.24045 -16.54146 -16.31327 -16.08584 -15.93716 -14.87057 -14.65958 -14.33820 -13.96458 -13.80051 -13.69959 -13.68772 -13.42643 -12.82227 -12.50295 -12.35403 -12.13626 -11.53182 -11.46652 -11.19385 -10.55495 -10.54780 -10.39458 -10.01040 -8.41710 -8.19981 -6.30497 -0.04911 0.19053 1.41556 1.42076 1.42862 1.52957 1.63435 2.39727 2.50994 2.77252 3.14207 3.19501 3.57921 3.77860 3.96903 4.08505 4.24737 4.25819 4.37842 4.59643 4.72166 4.82164 4.92235 4.97444 5.00907 5.18010 5.25465 5.42631 5.51825 5.73594 5.85497 6.00582 6.09189 6.25294 6.63351 6.86919 6.92709 7.38972 8.91787 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.077145 B = 0.003250 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.867891 B = 8614.155363 C = 8951.273834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.104 4.104 11 C 0.129 3.871 12 N -0.720 5.720 13 C 0.195 3.805 14 C 0.027 3.973 15 N -0.436 5.436 16 C -0.018 4.018 17 C -0.209 4.209 18 C 0.024 3.976 19 O -0.201 6.201 20 C 0.038 3.962 21 C -0.162 4.162 22 H 0.263 0.737 23 H -0.003 1.003 24 H -0.003 1.003 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.412 0.588 30 H 0.166 0.834 31 H 0.179 0.821 32 H 0.263 0.737 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -21.941 -0.012 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.142 4.142 11 C 0.005 3.995 12 N -0.349 5.349 13 C 0.086 3.914 14 C -0.142 4.142 15 N -0.144 5.144 16 C -0.151 4.151 17 C -0.228 4.228 18 C -0.041 4.041 19 O -0.101 6.101 20 C -0.013 4.013 21 C -0.194 4.194 22 H 0.072 0.928 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.249 0.751 30 H 0.184 0.816 31 H 0.196 0.804 32 H 0.279 0.721 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.239 -21.897 -0.007 22.515 hybrid contribution 0.944 1.412 -0.009 1.698 sum 6.183 -20.485 -0.016 21.398 Atomic orbital electron populations 1.70085 1.07755 1.27766 1.51677 1.25954 0.95734 1.03314 0.94847 0.85483 0.78711 0.78649 0.78424 1.19886 1.20966 1.18695 1.21696 0.93640 0.92322 1.50448 0.91990 1.18934 0.94381 0.92570 0.95400 1.21566 0.98566 0.92358 1.01686 1.21431 0.91954 0.84836 1.01234 1.44734 1.09601 1.00740 1.79813 1.18488 0.93257 0.85762 0.93870 1.22596 0.92763 0.93778 1.05107 1.66884 1.39477 0.98563 1.09509 1.21181 0.89527 0.95138 1.09265 1.22575 1.00855 0.88908 1.10472 1.24923 0.84799 0.94840 0.99559 1.84001 1.36750 1.12809 1.76579 1.20192 0.92545 0.86669 1.01886 1.19727 1.01176 0.86301 1.12243 0.92791 0.98496 0.98498 0.91963 0.91952 0.92076 0.92074 0.75125 0.81645 0.80378 0.72142 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.10 -3.77 5.27 30.60 0.16 -3.61 16 11 C 0.13 3.89 4.92 86.38 0.42 4.32 16 12 N -0.72 -18.22 5.74 -338.91 -1.95 -20.17 16 13 C 0.20 5.23 6.67 38.30 0.26 5.48 16 14 C 0.03 0.80 10.47 84.99 0.89 1.69 16 15 N -0.44 -13.81 10.40 -184.52 -1.92 -15.73 16 16 C -0.02 -0.53 7.54 41.82 0.32 -0.21 16 17 C -0.21 -4.16 11.14 23.56 0.26 -3.90 16 18 C 0.02 0.35 11.96 66.86 0.80 1.15 16 19 O -0.20 -4.34 10.58 -7.94 -0.08 -4.42 16 20 C 0.04 0.99 7.42 23.01 0.17 1.16 16 21 C -0.16 -4.00 10.04 22.62 0.23 -3.77 16 22 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 28 H 0.06 1.87 7.95 -2.39 -0.02 1.85 16 29 H 0.41 8.82 8.49 -92.71 -0.79 8.03 16 30 H 0.17 4.61 6.72 -2.91 -0.02 4.59 16 31 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.26 0.68 8.06 -2.91 -0.02 0.65 16 33 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -68.66 289.75 3.05 -65.61 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.33 Total: 10.25 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.35 Total: -25.42 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -3.58 Total: -91.38 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.08 Total: -4.42 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.66 3.05 -65.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168431232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.858 kcal (2) G-P(sol) polarization free energy of solvation -68.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds