Wall clock time and date at job start Sun Mar 29 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46969 * 2 1 4 4 O 1.42894 * 109.47415 * 239.99993 * 2 1 3 5 5 C 1.42903 * 114.00259 * 90.00167 * 4 2 1 6 6 C 1.50695 * 109.47055 * 180.02562 * 5 4 2 7 7 H 1.08007 * 120.00491 * 359.97438 * 6 5 4 8 8 C 1.37885 * 120.00214 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99179 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00280 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47339 * 89.99877 * 10 8 6 12 12 H 1.48499 * 109.47315 * 210.00217 * 10 8 6 13 13 H 1.48509 * 109.47403 * 329.99972 * 10 8 6 14 14 C 1.50705 * 109.47358 * 119.99347 * 2 1 3 15 15 C 1.35104 * 126.40680 * 85.02629 * 14 2 1 16 16 N 1.33510 * 108.62283 * 179.74162 * 15 14 2 17 17 C 1.32554 * 109.16428 * 0.02562 * 16 15 14 18 18 C 1.40934 * 132.32922 * 180.02562 * 17 16 15 19 19 C 1.36026 * 119.32568 * 179.97438 * 18 17 16 20 20 C 1.40472 * 119.69636 * 359.97438 * 19 18 17 21 21 C 1.34955 * 120.29771 * 359.97438 * 20 19 18 22 22 N 1.36479 * 120.61199 * 0.02562 * 21 20 19 23 23 H 1.09002 * 109.46517 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47292 * 300.00062 * 1 2 3 25 25 H 1.09000 * 109.46895 * 60.00400 * 1 2 3 26 26 H 1.09001 * 109.46237 * 299.99530 * 5 4 2 27 27 H 1.08994 * 109.47310 * 59.99647 * 5 4 2 28 28 H 0.96999 * 119.99415 * 180.02562 * 9 8 6 29 29 H 1.08006 * 125.68569 * 359.73804 * 15 14 2 30 30 H 1.07999 * 120.33638 * 359.95359 * 18 17 16 31 31 H 1.08005 * 120.14887 * 179.97438 * 19 18 17 32 32 H 1.07994 * 119.85058 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.69444 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2002 0.1829 -2.2940 6 6 2.7004 -0.6284 -3.4612 7 1 2.8553 -1.6918 -3.3530 8 6 2.9604 -0.0133 -4.6676 9 7 2.7713 1.2814 -4.7995 10 14 3.5811 -1.0189 -6.1141 11 1 2.4257 -1.5193 -6.9013 12 1 4.4371 -0.1670 -6.9783 13 1 4.3743 -2.1700 -5.6129 14 6 2.0324 -0.7103 1.2306 15 6 2.2108 -2.0421 1.3710 16 7 2.6733 -2.2830 2.6001 17 6 2.7952 -1.1353 3.2519 18 6 3.2317 -0.8261 4.5558 19 6 3.2515 0.4722 4.9614 20 6 2.8386 1.4835 4.0783 21 6 2.4241 1.1720 2.8323 22 7 2.3993 -0.1264 2.4124 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.2538 0.6545 -2.5588 27 1 2.9320 0.9513 -2.0450 28 1 2.9539 1.7141 -5.6482 29 1 2.0124 -2.7875 0.6151 30 1 3.5470 -1.6119 5.2262 31 1 3.5831 0.7241 5.9579 32 1 2.8529 2.5150 4.3978 33 1 2.1091 1.9574 2.1612 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604498.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:02 Heat of formation + Delta-G solvation = 38.168035 kcal Electronic energy + Delta-G solvation = -17109.306736 eV Core-core repulsion = 14329.448863 eV Total energy + Delta-G solvation = -2779.857873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.68109 -37.64173 -36.90111 -33.74843 -32.85824 -31.18222 -30.04749 -27.93735 -27.16519 -23.95106 -23.20280 -22.37629 -22.18308 -20.37090 -17.45247 -16.78732 -16.37584 -15.90884 -15.78819 -15.56561 -14.61593 -14.57284 -14.09939 -14.00980 -13.27233 -12.63496 -12.43336 -12.21917 -12.07742 -11.80584 -11.63580 -11.50160 -10.96012 -10.87885 -10.83771 -10.64491 -10.15466 -9.79483 -9.19471 -8.99675 -8.68775 -8.28036 -7.64636 -6.16385 -4.18155 0.76295 1.32458 2.61257 3.03635 3.28414 3.33630 3.39399 3.61164 4.28043 4.30433 4.52043 4.54728 4.83375 4.91034 5.12182 5.20619 5.27458 5.42323 5.56972 5.62114 5.79271 5.85084 5.93287 6.07926 6.18929 6.23428 6.44978 6.58261 6.86505 6.98460 7.17044 7.32788 7.73908 8.01485 8.08361 8.45366 8.94124 9.46838 10.95097 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.004841 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.062786 B = 5782.724758 C = 5954.840809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.167 3.833 3 H 0.055 0.945 4 O -0.377 6.377 5 C 0.197 3.803 6 C -0.515 4.515 7 H 0.068 0.932 8 C 0.057 3.943 9 N -0.899 5.899 10 Si 0.909 3.091 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.271 1.271 14 C -0.050 4.050 15 C 0.060 3.940 16 N -0.495 5.495 17 C 0.212 3.788 18 C -0.078 4.078 19 C -0.109 4.109 20 C -0.152 4.152 21 C 0.063 3.937 22 N -0.358 5.358 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.005 0.995 28 H 0.264 0.736 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 1.961 17.334 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.106 3.894 3 H 0.073 0.927 4 O -0.296 6.296 5 C 0.123 3.877 6 C -0.554 4.554 7 H 0.087 0.913 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.736 3.264 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.163 4.163 15 C -0.091 4.091 16 N -0.215 5.215 17 C -0.031 4.031 18 C -0.098 4.098 19 C -0.132 4.132 20 C -0.173 4.173 21 C -0.060 4.060 22 N -0.032 5.032 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.202 0.798 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.692 1.129 17.409 17.527 hybrid contribution 0.118 0.832 -1.216 1.478 sum -1.574 1.962 16.193 16.387 Atomic orbital electron populations 1.22225 0.95227 1.02993 1.01572 1.19805 0.92786 0.93672 0.83134 0.92692 1.87924 1.85944 1.36527 1.19243 1.20312 0.95262 0.90084 0.82090 1.21035 1.44246 0.95714 0.94360 0.91346 1.24938 0.95513 0.95126 0.98811 1.69956 1.48871 1.09108 1.25855 0.86318 0.78827 0.79831 0.81448 1.20380 1.21075 1.19537 1.21271 1.12660 0.94306 0.88033 1.22339 0.99212 0.93732 0.93784 1.70761 1.21441 1.23101 1.06228 1.20958 1.04697 0.83610 0.93825 1.20228 1.00406 0.97593 0.91590 1.20969 1.00089 0.91881 1.00304 1.20732 1.03031 1.00932 0.92593 1.21656 1.01897 0.84880 0.97546 1.42663 1.41484 1.06930 1.12144 0.91524 0.92998 0.91321 0.97322 0.97725 0.92601 0.79767 0.83455 0.84318 0.83442 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.51 37.16 0.35 -2.25 16 2 C 0.17 3.11 3.12 -27.88 -0.09 3.03 16 3 H 0.06 1.00 7.61 -51.93 -0.40 0.60 16 4 O -0.38 -8.88 9.67 -35.23 -0.34 -9.22 16 5 C 0.20 5.24 5.50 36.00 0.20 5.44 16 6 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 16 7 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C -0.05 -0.90 6.10 -81.47 -0.50 -1.40 16 15 C 0.06 1.11 11.40 -17.94 -0.20 0.90 16 16 N -0.50 -9.05 11.32 -12.78 -0.14 -9.19 16 17 C 0.21 3.40 7.81 -156.04 -1.22 2.18 16 18 C -0.08 -0.92 10.11 -39.36 -0.40 -1.32 16 19 C -0.11 -1.00 10.07 -39.53 -0.40 -1.40 16 20 C -0.15 -1.42 9.99 -39.91 -0.40 -1.81 16 21 C 0.06 0.76 10.82 -16.65 -0.18 0.58 16 22 N -0.36 -5.68 2.95 -58.46 -0.17 -5.85 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 26 H 0.01 0.24 7.87 -51.93 -0.41 -0.17 16 27 H 0.00 0.14 8.08 -51.93 -0.42 -0.28 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.19 3.24 8.06 -52.48 -0.42 2.81 16 30 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.16 1.61 7.92 -52.49 -0.42 1.19 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -32.96 291.38 -7.93 -40.89 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.13 Total: -2.19 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.25 Total: -9.78 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.42 Total: -40.75 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.34 Total: -9.22 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.96 -7.93 -40.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604498.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.056 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds