Wall clock time and date at job start Sun Mar 29 2020 23:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 O 1.42895 * 109.46921 * 119.99652 * 2 1 3 5 5 C 1.42900 * 114.00471 * 269.99990 * 4 2 1 6 6 C 1.50693 * 109.47299 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00025 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99669 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00295 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46993 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47056 * 119.99571 * 10 8 6 13 13 H 1.48491 * 109.47460 * 240.00130 * 10 8 6 14 14 C 1.50698 * 109.46835 * 239.99874 * 2 1 3 15 15 C 1.35105 * 126.41352 * 85.02882 * 14 2 1 16 16 N 1.33512 * 108.62438 * 179.97438 * 15 14 2 17 17 C 1.32549 * 109.16348 * 0.02562 * 16 15 14 18 18 C 1.40938 * 132.32849 * 179.97438 * 17 16 15 19 19 C 1.36020 * 119.32836 * 180.02562 * 18 17 16 20 20 C 1.40472 * 119.69498 * 0.02562 * 19 18 17 21 21 C 1.34954 * 120.29818 * 359.97438 * 20 19 18 22 22 N 1.36479 * 120.61223 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46737 * 300.00718 * 1 2 3 25 25 H 1.09009 * 109.46782 * 59.99895 * 1 2 3 26 26 H 1.09002 * 109.46824 * 300.00093 * 5 4 2 27 27 H 1.09001 * 109.46772 * 59.99636 * 5 4 2 28 28 H 0.97002 * 119.99675 * 180.02562 * 9 8 6 29 29 H 1.08006 * 125.68385 * 0.02562 * 15 14 2 30 30 H 1.07993 * 120.33376 * 0.03107 * 18 17 16 31 31 H 1.07998 * 120.15280 * 180.02562 * 19 18 17 32 32 H 1.07998 * 119.85373 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.69263 * 179.74632 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 1 2.8561 -1.6914 3.3528 8 6 2.9615 -0.0128 4.6672 9 7 2.7726 1.2820 4.7991 10 14 3.5822 -1.0183 6.1140 11 1 3.7109 -2.4412 5.7089 12 1 4.9081 -0.5041 6.5416 13 1 2.6218 -0.9090 7.2412 14 6 2.0323 -0.7104 -1.2305 15 6 2.2108 -0.1662 -2.4541 16 7 2.6684 -1.1114 -3.2786 17 6 2.7870 -2.2505 -2.6113 18 6 3.2172 -3.5360 -2.9972 19 6 3.2340 -4.5372 -2.0766 20 6 2.8233 -4.2775 -0.7585 21 6 2.4140 -3.0414 -0.4040 22 7 2.3922 -2.0278 -1.3176 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 2.9320 0.9514 2.0450 27 1 1.2538 0.6548 2.5588 28 1 2.9559 1.7149 5.6476 29 1 2.0165 0.8623 -2.7206 30 1 3.5303 -3.7242 -4.0134 31 1 3.5615 -5.5272 -2.3576 32 1 2.8353 -5.0706 -0.0256 33 1 2.0965 -2.8536 0.6111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:04 Heat of formation + Delta-G solvation = 34.091166 kcal Electronic energy + Delta-G solvation = -17387.034052 eV Core-core repulsion = 14606.999393 eV Total energy + Delta-G solvation = -2780.034659 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.57153 -37.50952 -36.95417 -33.51100 -32.83595 -31.36005 -29.86144 -27.84022 -27.24743 -23.82071 -23.16030 -22.55672 -21.65589 -20.57004 -17.31950 -16.62578 -16.43888 -15.74725 -15.64301 -15.53528 -14.59852 -14.29762 -14.10961 -14.04719 -13.34191 -12.69180 -12.28834 -12.13297 -12.08452 -11.68453 -11.57224 -11.47949 -10.98040 -10.90764 -10.74909 -10.56668 -10.15067 -9.94152 -9.22971 -9.05563 -8.60397 -8.33655 -7.50452 -6.21744 -4.24454 0.98843 1.46934 2.86850 3.07533 3.21753 3.28803 3.33477 3.73351 4.20255 4.39240 4.57216 4.84699 4.96896 5.05535 5.15191 5.22329 5.46023 5.54600 5.64123 5.71555 5.76356 5.98661 6.05904 6.20611 6.30287 6.34866 6.46177 6.73449 6.83536 6.97775 7.29427 7.31898 7.66012 8.00741 8.06043 8.37549 8.86410 9.40719 10.89533 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.006200 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.489348 B = 4515.257942 C = 5263.221350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.078 0.922 4 O -0.394 6.394 5 C 0.197 3.803 6 C -0.518 4.518 7 H 0.066 0.934 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.907 3.093 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.282 1.282 14 C -0.042 4.042 15 C 0.027 3.973 16 N -0.498 5.498 17 C 0.213 3.787 18 C -0.096 4.096 19 C -0.096 4.096 20 C -0.168 4.168 21 C 0.094 3.906 22 N -0.345 5.345 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.179 0.821 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -7.680 -11.308 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.100 3.900 3 H 0.095 0.905 4 O -0.314 6.314 5 C 0.123 3.877 6 C -0.556 4.556 7 H 0.084 0.916 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.734 3.266 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 C -0.156 4.156 15 C -0.124 4.124 16 N -0.218 5.218 17 C -0.030 4.030 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.189 4.189 21 C -0.029 4.029 22 N -0.017 5.017 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.196 0.804 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.763 -7.551 -11.947 14.243 hybrid contribution 0.117 -0.128 1.759 1.767 sum -1.646 -7.679 -10.188 12.864 Atomic orbital electron populations 1.22247 0.95474 1.02308 1.02126 1.20192 0.92897 0.94568 0.82357 0.90454 1.87794 1.86022 1.37369 1.20236 1.20302 0.95418 0.90054 0.81925 1.21023 1.44552 0.95500 0.94517 0.91615 1.24941 0.95477 0.95125 0.98814 1.69963 1.48517 1.09065 1.25860 0.86292 0.78467 0.80176 0.81635 1.19505 1.20771 1.20747 1.21464 1.12228 0.82800 0.99076 1.22151 1.02250 0.99486 0.88527 1.70692 1.21972 0.97806 1.31364 1.20936 1.04555 0.96266 0.81243 1.20129 1.02238 0.88152 1.01059 1.20999 0.98961 0.99309 0.92731 1.20804 1.04324 0.96142 0.97651 1.22155 0.98654 0.86264 0.95811 1.42592 1.40561 1.08387 1.10122 0.92592 0.91368 0.92105 0.97447 0.97242 0.92562 0.80439 0.83738 0.84487 0.83436 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.51 37.16 0.35 -2.23 16 2 C 0.16 2.91 3.19 -27.88 -0.09 2.82 16 3 H 0.08 1.37 7.79 -51.93 -0.40 0.96 16 4 O -0.39 -8.77 7.74 -35.23 -0.27 -9.04 16 5 C 0.20 5.08 5.50 36.00 0.20 5.28 16 6 C -0.52 -14.47 9.43 -34.44 -0.32 -14.79 16 7 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 9 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 10 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C -0.04 -0.74 6.10 -81.47 -0.50 -1.24 16 15 C 0.03 0.44 11.75 -17.94 -0.21 0.23 16 16 N -0.50 -8.84 11.32 -12.78 -0.14 -8.99 16 17 C 0.21 3.60 7.81 -156.04 -1.22 2.38 16 18 C -0.10 -1.26 10.11 -39.36 -0.40 -1.66 16 19 C -0.10 -1.08 10.07 -39.54 -0.40 -1.48 16 20 C -0.17 -2.12 9.99 -39.91 -0.40 -2.51 16 21 C 0.09 1.50 10.34 -16.65 -0.17 1.32 16 22 N -0.35 -6.06 2.95 -58.46 -0.17 -6.23 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.10 7.87 -51.93 -0.41 0.70 16 25 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 26 H 0.01 0.21 8.09 -51.93 -0.42 -0.21 16 27 H 0.01 0.26 7.87 -51.93 -0.41 -0.15 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 29 H 0.18 2.33 8.06 -52.48 -0.42 1.91 16 30 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.18 3.05 6.51 -52.48 -0.34 2.70 16 LS Contribution 288.14 15.07 4.34 4.34 Total: -1.00 -31.66 288.14 -7.85 -39.51 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.06 Total: -0.12 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.25 Total: -10.36 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.42 Total: -40.43 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.27 Total: -9.04 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.66 -7.85 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.601 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds