Wall clock time and date at job start Sun Mar 29 2020 23:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 O 1.42895 * 109.46921 * 119.99652 * 2 1 3 5 5 C 1.42900 * 114.00471 * 269.99990 * 4 2 1 6 6 C 1.50693 * 109.47299 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00025 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99669 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00295 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46993 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47056 * 119.99571 * 10 8 6 13 13 H 1.48491 * 109.47460 * 240.00130 * 10 8 6 14 14 C 1.50698 * 109.46835 * 239.99874 * 2 1 3 15 15 C 1.35105 * 126.41352 * 85.02882 * 14 2 1 16 16 N 1.33512 * 108.62438 * 179.97438 * 15 14 2 17 17 C 1.32549 * 109.16348 * 0.02562 * 16 15 14 18 18 C 1.40938 * 132.32849 * 179.97438 * 17 16 15 19 19 C 1.36020 * 119.32836 * 180.02562 * 18 17 16 20 20 C 1.40472 * 119.69498 * 0.02562 * 19 18 17 21 21 C 1.34954 * 120.29818 * 359.97438 * 20 19 18 22 22 N 1.36479 * 120.61223 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46737 * 300.00718 * 1 2 3 25 25 H 1.09009 * 109.46782 * 59.99895 * 1 2 3 26 26 H 1.09002 * 109.46824 * 300.00093 * 5 4 2 27 27 H 1.09001 * 109.46772 * 59.99636 * 5 4 2 28 28 H 0.97002 * 119.99675 * 180.02562 * 9 8 6 29 29 H 1.08006 * 125.68385 * 0.02562 * 15 14 2 30 30 H 1.07993 * 120.33376 * 0.03107 * 18 17 16 31 31 H 1.07998 * 120.15280 * 180.02562 * 19 18 17 32 32 H 1.07998 * 119.85373 * 179.97438 * 20 19 18 33 33 H 1.08006 * 119.69263 * 179.74632 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2001 0.1830 2.2941 6 6 2.7014 -0.6281 3.4610 7 1 2.8561 -1.6914 3.3528 8 6 2.9615 -0.0128 4.6672 9 7 2.7726 1.2820 4.7991 10 14 3.5822 -1.0183 6.1140 11 1 3.7109 -2.4412 5.7089 12 1 4.9081 -0.5041 6.5416 13 1 2.6218 -0.9090 7.2412 14 6 2.0323 -0.7104 -1.2305 15 6 2.2108 -0.1662 -2.4541 16 7 2.6684 -1.1114 -3.2786 17 6 2.7870 -2.2505 -2.6113 18 6 3.2172 -3.5360 -2.9972 19 6 3.2340 -4.5372 -2.0766 20 6 2.8233 -4.2775 -0.7585 21 6 2.4140 -3.0414 -0.4040 22 7 2.3922 -2.0278 -1.3176 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 2.9320 0.9514 2.0450 27 1 1.2538 0.6548 2.5588 28 1 2.9559 1.7149 5.6476 29 1 2.0165 0.8623 -2.7206 30 1 3.5303 -3.7242 -4.0134 31 1 3.5615 -5.5272 -2.3576 32 1 2.8353 -5.0706 -0.0256 33 1 2.0965 -2.8536 0.6111 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205604499.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:04 Heat of formation + Delta-G solvation = 15.631555 kcal Electronic energy + Delta-G solvation = -17387.834521 eV Core-core repulsion = 14606.999393 eV Total energy + Delta-G solvation = -2780.835128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.78397 -39.07600 -38.19988 -35.18099 -34.44818 -32.82994 -31.01143 -29.32509 -29.04094 -25.21546 -24.61789 -24.06981 -23.02653 -21.87608 -18.92344 -18.22210 -17.80005 -17.25831 -16.97053 -16.69307 -16.34600 -15.92349 -15.69335 -15.28431 -14.51846 -14.41995 -13.85983 -13.60199 -13.21564 -13.16037 -12.91606 -12.79773 -12.74189 -12.62173 -12.30997 -11.92298 -11.79605 -11.39020 -11.18056 -10.94253 -10.33153 -9.78553 -8.71034 -8.34522 -6.46815 -0.09978 0.32466 1.39005 1.39785 1.53724 1.68226 1.83325 2.31061 2.61510 2.90222 3.00048 3.33322 3.64163 3.78302 4.05205 4.14519 4.16590 4.23988 4.32162 4.56717 4.66389 4.72603 4.84117 4.86893 5.05940 5.06602 5.20631 5.23734 5.27857 5.52230 5.61985 5.67019 5.92138 6.12830 6.45254 6.74916 6.82046 7.24604 8.77637 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.006200 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.489348 B = 4515.257942 C = 5263.221350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.076 0.924 4 O -0.400 6.400 5 C 0.213 3.787 6 C -0.545 4.545 7 H 0.064 0.936 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.980 3.020 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.272 1.272 14 C -0.075 4.075 15 C 0.030 3.970 16 N -0.526 5.526 17 C 0.199 3.801 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.143 4.143 21 C 0.048 3.952 22 N -0.353 5.353 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.089 0.911 26 H -0.017 1.017 27 H -0.005 1.005 28 H 0.270 0.730 29 H 0.203 0.797 30 H 0.171 0.829 31 H 0.187 0.813 32 H 0.181 0.819 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 -10.096 -11.726 15.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 H 0.094 0.906 4 O -0.320 6.320 5 C 0.138 3.862 6 C -0.583 4.583 7 H 0.082 0.918 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.803 3.197 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.197 1.197 14 C -0.189 4.189 15 C -0.121 4.121 16 N -0.246 5.246 17 C -0.044 4.044 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.163 4.163 21 C -0.074 4.074 22 N -0.025 5.025 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.001 0.999 27 H 0.012 0.988 28 H 0.079 0.921 29 H 0.220 0.780 30 H 0.189 0.811 31 H 0.204 0.796 32 H 0.198 0.802 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.164 -9.974 -12.378 15.939 hybrid contribution -0.057 0.525 1.792 1.868 sum -1.221 -9.450 -10.586 14.242 Atomic orbital electron populations 1.22156 0.93650 1.02258 1.03019 1.20376 0.94357 0.94436 0.81228 0.90610 1.87772 1.86486 1.37139 1.20573 1.19880 0.93708 0.89607 0.82970 1.21368 1.45423 0.95703 0.95759 0.91778 1.25924 0.95189 0.96283 1.01712 1.70072 1.49049 1.10770 1.26947 0.85175 0.78046 0.78773 0.77685 1.18539 1.20039 1.19710 1.21389 1.14816 0.83649 0.99033 1.22573 1.01152 1.00451 0.87952 1.70694 1.23491 0.98518 1.31931 1.21653 1.04301 0.97460 0.80965 1.20635 1.02118 0.86966 1.02934 1.21545 0.96417 1.00837 0.91240 1.21337 1.00713 0.95191 0.99108 1.22212 1.02216 0.87667 0.95302 1.42708 1.40613 1.08447 1.10687 0.93047 0.92290 0.89254 0.99914 0.98767 0.92067 0.77987 0.81121 0.79603 0.80218 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.51 71.98 0.68 -4.26 16 2 C 0.16 5.90 3.19 29.85 0.10 5.99 16 3 H 0.08 2.84 7.79 -2.39 -0.02 2.82 16 4 O -0.40 -18.65 7.74 -148.98 -1.15 -19.80 16 5 C 0.21 11.53 5.50 71.23 0.39 11.92 16 6 C -0.54 -31.23 9.43 25.60 0.24 -30.98 16 7 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 8 C 0.01 0.43 5.46 84.66 0.46 0.89 16 9 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 10 Si 0.98 43.17 29.54 68.60 2.03 45.19 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 C -0.08 -2.74 6.10 41.06 0.25 -2.49 16 15 C 0.03 0.99 11.75 83.72 0.98 1.98 16 16 N -0.53 -18.50 11.32 -194.34 -2.20 -20.70 16 17 C 0.20 6.56 7.81 134.11 1.05 7.61 16 18 C -0.11 -2.52 10.11 22.42 0.23 -2.29 16 19 C -0.08 -1.41 10.07 22.30 0.22 -1.18 16 20 C -0.14 -3.20 9.99 22.06 0.22 -2.98 16 21 C 0.05 1.54 10.34 83.21 0.86 2.40 16 22 N -0.35 -12.50 2.95 -338.87 -1.00 -13.50 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.98 7.87 -2.39 -0.02 1.96 16 25 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 26 H -0.02 -0.97 8.09 -2.39 -0.02 -0.99 16 27 H -0.01 -0.30 7.87 -2.39 -0.02 -0.32 16 28 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 29 H 0.20 5.26 8.06 -2.91 -0.02 5.23 16 30 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 32 H 0.18 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.16 5.57 6.51 -2.91 -0.02 5.55 16 Total: -1.00 -70.35 288.14 4.75 -65.60 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.10 Total: 11.05 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.69 Total: -13.41 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -2.91 Total: -88.64 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.15 Total: -19.80 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.35 4.75 -65.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604499.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.235 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds