Wall clock time and date at job start Sun Mar 29 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00490 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.46708 * 329.99244 * 13 12 11 15 15 C 1.52991 * 109.47653 * 89.99796 * 13 12 11 16 16 C 1.52993 * 109.47659 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46986 * 300.00237 * 16 15 13 18 18 C 1.52998 * 109.47303 * 59.99216 * 17 16 15 19 19 C 1.52997 * 109.47527 * 300.00808 * 18 17 16 20 20 H 1.08995 * 109.47252 * 180.02562 * 19 18 17 21 21 Cl 1.80306 * 109.46799 * 299.99767 * 19 18 17 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.09009 * 109.46951 * 300.00408 * 15 13 12 30 30 H 1.08997 * 109.47300 * 60.00073 * 15 13 12 31 31 H 1.08998 * 109.47887 * 179.97438 * 16 15 13 32 32 H 1.09005 * 109.47036 * 59.99243 * 16 15 13 33 33 H 1.09001 * 109.46942 * 299.99891 * 17 16 15 34 34 H 1.08994 * 109.47118 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.47181 * 180.02562 * 18 17 16 36 36 H 1.09010 * 109.46785 * 60.00579 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4086 -6.0733 0.0018 13 6 1.7941 -7.3634 0.0018 14 1 0.8342 -7.3085 0.5154 15 6 1.5752 -7.8242 -1.4405 16 6 0.9167 -9.2052 -1.4405 17 6 1.8244 -10.2031 -0.7184 18 6 2.0434 -9.7422 0.7240 19 6 2.7018 -8.3612 0.7239 20 1 2.8582 -8.0331 1.7515 21 17 4.2897 -8.4526 -0.1254 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 0.9281 -7.1135 -1.9548 30 1 2.5351 -7.8791 -1.9540 31 1 0.7603 -9.5333 -2.4681 32 1 -0.0433 -9.1499 -0.9270 33 1 2.7844 -10.2583 -1.2318 34 1 1.3551 -11.1868 -0.7180 35 1 2.6904 -10.4528 1.2382 36 1 1.0834 -9.6870 1.2374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:28 Heat of formation + Delta-G solvation = -96.835986 kcal Electronic energy + Delta-G solvation = -15923.588659 eV Core-core repulsion = 13238.984066 eV Total energy + Delta-G solvation = -2684.604593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.27099 -36.71209 -35.36721 -33.81565 -31.61929 -30.83420 -29.56184 -26.52873 -23.23236 -22.71301 -22.18596 -20.37512 -19.70375 -16.78246 -16.31000 -15.67609 -15.32109 -14.98393 -14.45561 -14.42127 -13.53428 -13.44857 -13.11861 -12.79461 -12.27004 -12.03434 -11.77451 -11.65155 -11.29326 -11.08672 -10.95329 -10.85543 -10.67668 -10.55454 -10.31481 -10.25232 -10.10543 -9.78144 -9.42244 -9.12623 -9.07723 -8.35062 -6.00243 -4.02136 2.25869 3.32332 3.39596 3.44735 3.76145 4.38290 4.47272 4.52667 4.72396 4.89426 4.99618 5.09843 5.16982 5.24236 5.36041 5.38195 5.53470 5.65726 5.75287 5.79856 5.80697 5.94202 5.96266 6.11197 6.20760 6.26832 6.70522 6.74218 7.11046 7.55503 7.67576 7.79417 7.99660 8.42910 9.04838 9.62041 11.11402 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046042 B = 0.004008 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.998767 B = 6985.054606 C = 7325.142481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.374 6.374 13 C 0.086 3.914 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.122 4.122 19 C 0.005 3.995 20 H 0.102 0.898 21 Cl -0.171 7.171 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -21.211 0.119 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.014 4.014 12 O -0.293 6.293 13 C 0.027 3.973 14 H 0.089 0.911 15 C -0.184 4.184 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.159 4.159 19 C -0.039 4.039 20 H 0.120 0.880 21 Cl -0.145 7.145 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.955 -21.064 0.057 21.155 hybrid contribution 0.122 0.979 -0.001 0.986 sum 2.077 -20.086 0.056 20.193 Atomic orbital electron populations 1.69975 1.06079 1.26511 1.51078 1.25024 0.94861 0.99314 0.95304 0.86517 0.80188 0.83652 0.77556 1.19656 1.21004 1.21003 1.21269 0.93197 0.90846 1.50323 0.92456 1.19053 0.93923 0.91140 0.97270 1.21638 0.99607 0.91630 1.01574 1.22845 0.92175 0.87049 0.99322 1.88021 1.33804 1.12594 1.94929 1.22164 0.94864 0.84467 0.95787 0.91072 1.22094 1.02549 0.96664 0.97113 1.21509 0.98516 0.94661 1.00799 1.21624 1.01015 0.98610 0.95037 1.21846 1.01120 0.94451 0.98517 1.24199 0.84594 0.96874 0.98261 0.87972 1.98703 1.35462 1.98747 1.81577 0.93061 0.96533 0.96518 0.92531 0.92604 0.93917 0.93806 0.91221 0.90125 0.91496 0.91991 0.90799 0.91593 0.90399 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.32 5.52 -26.74 -0.15 -2.47 16 11 C 0.06 1.11 5.75 37.15 0.21 1.33 16 12 O -0.37 -6.24 9.68 -35.23 -0.34 -6.59 16 13 C 0.09 1.09 2.30 -26.74 -0.06 1.02 16 14 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 15 C -0.15 -1.71 5.33 -26.74 -0.14 -1.85 16 16 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 17 C -0.13 -1.02 5.72 -26.73 -0.15 -1.18 16 18 C -0.12 -0.99 5.52 -26.73 -0.15 -1.14 16 19 C 0.00 0.05 3.31 -26.73 -0.09 -0.04 16 20 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 21 Cl -0.17 -2.19 25.72 -51.86 -1.33 -3.53 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.07 0.85 7.87 -51.92 -0.41 0.44 16 30 H 0.08 1.03 7.06 -51.93 -0.37 0.67 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 7.06 -51.93 -0.37 0.31 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -30.54 301.68 -8.79 -39.33 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -6.14 Total: -5.47 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.24 Total: -18.79 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.34 Total: -6.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -1.33 Total: -3.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.54 -8.79 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.503 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds