Wall clock time and date at job start Sun Mar 29 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48507 * 109.47037 * 240.00317 * 3 2 1 5 5 H 1.48498 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47291 * 120.00138 * 3 2 1 7 7 C 1.37880 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47098 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99968 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47108 * 30.00240 * 13 12 11 15 15 C 1.52997 * 109.46921 * 270.00062 * 13 12 11 16 16 C 1.53006 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 59.99836 * 16 15 13 18 18 C 1.53000 * 109.47060 * 300.00449 * 17 16 15 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 21 21 Cl 1.80301 * 109.47375 * 59.99847 * 19 18 17 22 22 H 0.97010 * 120.00231 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46825 * 59.99647 * 9 7 2 24 24 H 1.09000 * 109.47079 * 300.00020 * 9 7 2 25 25 H 1.09005 * 109.47314 * 59.99467 * 10 9 7 26 26 H 1.09000 * 109.47405 * 300.00162 * 10 9 7 27 27 H 1.08998 * 109.46777 * 60.00275 * 11 10 9 28 28 H 1.08991 * 109.47258 * 300.00463 * 11 10 9 29 29 H 1.09001 * 109.47375 * 300.00014 * 15 13 12 30 30 H 1.09000 * 109.47140 * 60.00032 * 15 13 12 31 31 H 1.08998 * 109.46505 * 299.99708 * 16 15 13 32 32 H 1.08996 * 109.46884 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 35 35 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8342 -7.3086 -0.5130 15 6 1.5753 -7.8241 1.4430 16 6 0.9168 -9.2051 1.4430 17 6 1.8244 -10.2030 0.7210 18 6 2.0432 -9.7422 -0.7215 19 6 2.7018 -8.3613 -0.7214 20 1 2.8581 -8.0332 -1.7491 21 17 4.2898 -8.4527 0.1277 22 1 -0.4851 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8532 -5.0451 -0.8886 28 1 0.8537 -5.0446 0.8913 29 1 2.5353 -7.8789 1.9565 30 1 0.9283 -7.1134 1.9572 31 1 -0.0432 -9.1498 0.9297 32 1 0.7605 -9.5331 2.4707 33 1 1.3550 -11.1868 0.7206 34 1 2.7844 -10.2583 1.2344 35 1 2.6895 -10.4534 -1.2359 36 1 1.0832 -9.6869 -1.2348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:31 Heat of formation + Delta-G solvation = -96.754742 kcal Electronic energy + Delta-G solvation = -15923.369328 eV Core-core repulsion = 13238.768258 eV Total energy + Delta-G solvation = -2684.601070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27041 -36.71179 -35.36729 -33.81325 -31.61775 -30.83313 -29.56131 -26.52587 -23.23003 -22.71223 -22.18511 -20.37354 -19.70340 -16.78112 -16.30594 -15.67386 -15.31951 -14.98314 -14.45702 -14.42752 -13.53396 -13.44817 -13.11578 -12.79426 -12.25709 -12.03220 -11.77749 -11.65350 -11.29308 -11.07841 -10.95577 -10.82304 -10.67492 -10.59007 -10.32472 -10.25326 -10.10450 -9.77449 -9.41540 -9.12618 -9.10068 -8.34166 -5.99708 -4.01811 2.25906 3.35333 3.38977 3.42161 3.76172 4.38336 4.47401 4.52694 4.72432 4.89456 4.99649 5.09880 5.16983 5.24245 5.36333 5.38247 5.53496 5.65779 5.75353 5.79909 5.80719 5.94238 5.96284 6.11261 6.20819 6.26850 6.70608 6.74279 7.11138 7.55500 7.67355 7.79640 7.99850 8.43085 9.04622 9.62196 11.11833 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046042 B = 0.004008 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.997722 B = 6985.205899 C = 7325.292679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.374 6.374 13 C 0.086 3.914 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.122 4.122 19 C 0.005 3.995 20 H 0.102 0.898 21 Cl -0.171 7.171 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -21.187 -0.110 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.014 4.014 12 O -0.293 6.293 13 C 0.027 3.973 14 H 0.089 0.911 15 C -0.184 4.184 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.159 4.159 19 C -0.039 4.039 20 H 0.120 0.880 21 Cl -0.145 7.145 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.918 -21.036 -0.049 21.124 hybrid contribution 0.150 0.971 0.000 0.982 sum 2.068 -20.065 -0.049 20.172 Atomic orbital electron populations 1.69954 1.06079 1.26738 1.50881 1.25018 0.94860 0.99284 0.95276 0.86628 0.79558 0.82964 0.78693 1.20199 1.21293 1.20186 1.21193 0.93120 0.90873 1.50617 0.92568 1.19042 0.93908 0.91104 0.97258 1.21640 0.99611 0.91634 1.01568 1.22844 0.92175 0.87049 0.99323 1.88021 1.33801 1.12595 1.94929 1.22165 0.94864 0.84468 0.95787 0.91069 1.22097 1.02549 0.96664 0.97112 1.21509 0.98517 0.94662 1.00799 1.21623 1.01015 0.98608 0.95036 1.21845 1.01124 0.94453 0.98514 1.24198 0.84594 0.96871 0.98263 0.87973 1.98702 1.35453 1.98746 1.81583 0.92944 0.96557 0.96517 0.92540 0.92600 0.93918 0.93801 0.90125 0.91222 0.91991 0.91498 0.91593 0.90798 0.90400 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.32 5.52 -26.73 -0.15 -2.47 16 11 C 0.06 1.11 5.75 37.16 0.21 1.33 16 12 O -0.37 -6.25 9.68 -35.23 -0.34 -6.59 16 13 C 0.09 1.09 2.30 -26.73 -0.06 1.02 16 14 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 15 C -0.15 -1.71 5.33 -26.73 -0.14 -1.85 16 16 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 17 C -0.13 -1.02 5.72 -26.73 -0.15 -1.18 16 18 C -0.12 -0.99 5.52 -26.73 -0.15 -1.14 16 19 C 0.00 0.05 3.31 -26.73 -0.09 -0.04 16 20 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 21 Cl -0.17 -2.19 25.73 -51.86 -1.33 -3.53 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 30 H 0.07 0.85 7.87 -51.93 -0.41 0.44 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.68 7.06 -51.93 -0.37 0.31 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -30.49 301.68 -8.79 -39.29 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -6.14 Total: -5.41 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.24 Total: -18.80 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.39 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.34 Total: -6.59 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -1.33 Total: -3.53 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.49 -8.79 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.468 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds