Wall clock time and date at job start Sun Mar 29 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48507 * 109.47037 * 240.00317 * 3 2 1 5 5 H 1.48498 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47291 * 120.00138 * 3 2 1 7 7 C 1.37880 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47098 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99968 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47108 * 30.00240 * 13 12 11 15 15 C 1.52997 * 109.46921 * 270.00062 * 13 12 11 16 16 C 1.53006 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 59.99836 * 16 15 13 18 18 C 1.53000 * 109.47060 * 300.00449 * 17 16 15 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 21 21 Cl 1.80301 * 109.47375 * 59.99847 * 19 18 17 22 22 H 0.97010 * 120.00231 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46825 * 59.99647 * 9 7 2 24 24 H 1.09000 * 109.47079 * 300.00020 * 9 7 2 25 25 H 1.09005 * 109.47314 * 59.99467 * 10 9 7 26 26 H 1.09000 * 109.47405 * 300.00162 * 10 9 7 27 27 H 1.08998 * 109.46777 * 60.00275 * 11 10 9 28 28 H 1.08991 * 109.47258 * 300.00463 * 11 10 9 29 29 H 1.09001 * 109.47375 * 300.00014 * 15 13 12 30 30 H 1.09000 * 109.47140 * 60.00032 * 15 13 12 31 31 H 1.08998 * 109.46505 * 299.99708 * 16 15 13 32 32 H 1.08996 * 109.46884 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 35 35 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8342 -7.3086 -0.5130 15 6 1.5753 -7.8241 1.4430 16 6 0.9168 -9.2051 1.4430 17 6 1.8244 -10.2030 0.7210 18 6 2.0432 -9.7422 -0.7215 19 6 2.7018 -8.3613 -0.7214 20 1 2.8581 -8.0332 -1.7491 21 17 4.2898 -8.4527 0.1277 22 1 -0.4851 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8532 -5.0451 -0.8886 28 1 0.8537 -5.0446 0.8913 29 1 2.5353 -7.8789 1.9565 30 1 0.9283 -7.1134 1.9572 31 1 -0.0432 -9.1498 0.9297 32 1 0.7605 -9.5331 2.4707 33 1 1.3550 -11.1868 0.7206 34 1 2.7844 -10.2583 1.2344 35 1 2.6895 -10.4534 -1.2359 36 1 1.0832 -9.6869 -1.2348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673803.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:31 Heat of formation + Delta-G solvation = -113.322982 kcal Electronic energy + Delta-G solvation = -15924.087780 eV Core-core repulsion = 13238.768258 eV Total energy + Delta-G solvation = -2685.319522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.113 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26573 -37.86806 -36.29402 -35.77137 -33.53654 -31.61314 -30.63099 -28.39116 -24.97014 -23.59076 -23.14636 -22.08510 -20.64623 -18.58588 -17.72508 -16.85419 -16.64242 -16.45915 -15.83003 -15.42042 -14.74721 -14.53291 -14.37424 -14.08756 -13.66678 -13.51014 -13.37109 -12.79742 -12.64094 -12.47675 -12.31248 -12.10218 -11.93329 -11.71758 -11.66472 -11.52328 -11.40182 -11.25893 -11.08122 -10.96887 -10.56216 -10.33427 -8.21693 -6.32660 1.37177 1.40251 1.43359 1.51386 2.39431 2.63698 3.11685 3.55206 3.72086 3.92976 4.06297 4.12986 4.15468 4.23564 4.35488 4.40991 4.46613 4.60520 4.68477 4.82432 4.89805 4.96546 4.99447 5.13588 5.14431 5.17720 5.26249 5.31429 5.47843 5.49533 5.69471 5.81908 6.18789 6.33163 6.82584 7.36454 8.90113 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046042 B = 0.004008 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.997722 B = 6985.205899 C = 7325.292679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.075 3.925 12 O -0.392 6.392 13 C 0.077 3.923 14 H 0.087 0.913 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.116 4.116 19 C 0.006 3.994 20 H 0.105 0.895 21 Cl -0.192 7.192 22 H 0.265 0.735 23 H -0.002 1.002 24 H -0.004 1.004 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -22.112 -0.521 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.001 4.001 12 O -0.311 6.311 13 C 0.019 3.981 14 H 0.105 0.895 15 C -0.183 4.183 16 C -0.150 4.150 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.038 4.038 20 H 0.123 0.877 21 Cl -0.166 7.166 22 H 0.074 0.926 23 H 0.017 0.983 24 H 0.015 0.985 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.988 -21.984 -0.459 22.078 hybrid contribution 0.102 1.214 0.127 1.225 sum 2.089 -20.770 -0.332 20.877 Atomic orbital electron populations 1.70073 1.07704 1.27958 1.51409 1.25949 0.95804 1.03264 0.94533 0.85498 0.78316 0.78058 0.79179 1.19200 1.20523 1.19289 1.21630 0.93523 0.92376 1.51028 0.92436 1.18913 0.94187 0.92429 0.95303 1.21377 0.98573 0.92385 1.01031 1.22496 0.91621 0.86035 0.99951 1.87974 1.34163 1.13845 1.95139 1.22479 0.95847 0.82826 0.96917 0.89535 1.22073 1.01812 0.98308 0.96124 1.21501 0.98885 0.92923 1.01705 1.21623 1.00404 0.99403 0.94696 1.21885 1.01976 0.92600 0.98909 1.24388 0.83473 0.98229 0.97680 0.87676 1.98703 1.37039 1.98793 1.82045 0.92625 0.98343 0.98519 0.93201 0.92887 0.92981 0.93478 0.91720 0.92279 0.90739 0.90796 0.89421 0.92029 0.89153 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.10 -4.22 5.52 30.59 0.17 -4.05 16 11 C 0.08 2.68 5.75 71.98 0.41 3.10 16 12 O -0.39 -12.86 9.68 -148.98 -1.44 -14.30 16 13 C 0.08 1.85 2.30 30.59 0.07 1.92 16 14 H 0.09 1.82 7.79 -2.39 -0.02 1.81 16 15 C -0.15 -3.26 5.33 30.60 0.16 -3.09 16 16 C -0.11 -1.76 5.92 30.60 0.18 -1.58 16 17 C -0.12 -1.70 5.72 30.59 0.17 -1.52 16 18 C -0.12 -1.56 5.52 30.59 0.17 -1.39 16 19 C 0.01 0.12 3.31 30.59 0.10 0.22 16 20 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 21 Cl -0.19 -4.79 25.73 -2.72 -0.07 -4.86 16 22 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 23 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 28 H 0.05 1.64 7.87 -2.39 -0.02 1.62 16 29 H 0.06 1.65 7.06 -2.39 -0.02 1.63 16 30 H 0.06 1.42 7.87 -2.39 -0.02 1.40 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.02 7.06 -2.39 -0.02 1.00 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.36 301.68 4.11 -61.25 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 1.02 Total: 3.51 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.29 Total: -35.84 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.28 Total: -56.57 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.44 Total: -14.30 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -4.79 SS G_CDS: -0.07 Total: -4.86 kcal Total: -65.36 4.11 -61.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673803.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.077 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds