Wall clock time and date at job start Sun Mar 29 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 119.99741 * 2 1 4 4 H 1.08000 * 119.99851 * 202.23564 * 3 2 1 5 5 C 1.38810 * 120.00424 * 22.23608 * 3 2 1 6 6 N 1.31619 * 119.99588 * 11.29101 * 5 3 2 7 7 Si 1.86800 * 120.00488 * 191.29280 * 5 3 2 8 8 H 1.48496 * 109.46938 * 89.99757 * 7 5 3 9 9 H 1.48503 * 109.47213 * 210.00086 * 7 5 3 10 10 H 1.48500 * 109.47001 * 330.00243 * 7 5 3 11 11 C 1.46497 * 120.00153 * 179.97438 * 2 1 3 12 12 C 1.50697 * 109.47019 * 269.99830 * 11 2 1 13 13 C 1.34247 * 126.49051 * 260.02054 * 12 11 2 14 14 N 1.36805 * 109.93568 * 179.97438 * 13 12 11 15 15 H 0.96997 * 125.07715 * 179.97438 * 14 13 12 16 16 C 1.37903 * 109.85093 * 0.22835 * 14 13 12 17 17 C 1.39102 * 133.35370 * 179.74542 * 16 14 13 18 18 C 1.37679 * 119.99082 * 180.02562 * 17 16 14 19 19 C 1.39269 * 120.62497 * 0.02562 * 18 17 16 20 20 O 1.35982 * 119.86888 * 179.97438 * 19 18 17 21 21 C 1.38046 * 120.26553 * 359.62422 * 19 18 17 22 22 C 1.39670 * 119.60463 * 0.58736 * 21 19 18 23 23 H 1.08996 * 109.46962 * 274.37559 * 1 2 3 24 24 H 1.08997 * 109.47061 * 34.37323 * 1 2 3 25 25 H 1.09000 * 109.46613 * 154.37145 * 1 2 3 26 26 H 0.97001 * 119.99877 * 179.97438 * 6 5 3 27 27 H 1.09008 * 109.46880 * 150.00072 * 11 2 1 28 28 H 1.09000 * 109.47303 * 30.00525 * 11 2 1 29 29 H 1.08000 * 125.03341 * 359.97438 * 13 12 11 30 30 H 1.07997 * 120.00079 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.68720 * 179.97438 * 18 17 16 32 32 H 0.96705 * 114.00279 * 89.99987 * 20 19 18 33 33 H 1.08002 * 120.19561 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1694 1.2207 -0.3539 5 6 1.5330 2.3434 0.4549 6 7 0.3818 2.2702 1.0887 7 14 2.3370 4.0049 0.1676 8 1 1.8715 4.5627 -1.1275 9 1 1.9661 4.9311 1.2675 10 1 3.8126 3.8416 0.1344 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7030 1.4216 13 6 3.5905 -1.5544 2.1118 14 7 3.4446 -2.0686 3.3711 15 1 4.1341 -2.0767 4.0533 16 6 2.1726 -2.5789 3.5241 17 6 1.5153 -3.2053 4.5779 18 6 0.2096 -3.6155 4.4281 19 6 -0.4652 -3.4103 3.2273 20 8 -1.7545 -3.8221 3.0960 21 6 0.1672 -2.7840 2.1720 22 6 1.4932 -2.3677 2.3111 23 1 -0.3633 0.0784 1.0246 24 1 -0.3633 0.8482 -0.5802 25 1 -0.3632 -0.9266 -0.4445 26 1 -0.0489 3.0790 1.4069 27 1 3.1500 -1.1385 -0.5134 28 1 1.6085 -2.0286 -0.5130 29 1 4.4909 -1.0966 1.7296 30 1 2.0293 -3.3698 5.5134 31 1 -0.2958 -4.1017 5.2494 32 1 -2.4080 -3.1560 3.3499 33 1 -0.3570 -2.6258 1.2411 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232866311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:08 Heat of formation + Delta-G solvation = 18.950993 kcal Electronic energy + Delta-G solvation = -17599.529730 eV Core-core repulsion = 14818.838544 eV Total energy + Delta-G solvation = -2780.691186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.03130 -39.28822 -37.40737 -36.07019 -33.83672 -32.28997 -30.28761 -29.28400 -27.85909 -27.01335 -23.82603 -23.22695 -22.67726 -20.28232 -18.95572 -18.83730 -18.44876 -16.93552 -16.73925 -16.18180 -15.59659 -15.52301 -15.24380 -14.83186 -14.70881 -14.51442 -13.68601 -13.53894 -13.29917 -12.91124 -12.81063 -12.51216 -12.44360 -12.09500 -12.07911 -11.94255 -11.79753 -11.19307 -10.60949 -10.44138 -8.93623 -8.79175 -8.37018 -7.75949 -5.22624 0.23012 0.62066 1.47373 1.49028 1.57117 1.90674 2.38093 2.55921 2.86881 3.39002 3.47576 3.89998 3.97439 4.05854 4.27104 4.41679 4.51218 4.67778 4.83250 4.85736 4.99487 5.05992 5.08869 5.20409 5.37256 5.51188 5.64132 5.67433 5.75064 5.79971 5.97394 6.23375 6.38360 6.87814 6.95806 7.20750 7.93386 8.39762 9.27842 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.007197 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.688305 B = 3889.733957 C = 4310.714401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.607 5.607 3 C -0.250 4.250 4 H 0.078 0.922 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.288 1.288 9 H -0.301 1.301 10 H -0.264 1.264 11 C 0.213 3.787 12 C -0.199 4.199 13 C 0.058 3.942 14 N -0.585 5.585 15 H 0.428 0.572 16 C 0.070 3.930 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.062 3.938 20 O -0.508 6.508 21 C -0.113 4.113 22 C -0.104 4.104 23 H -0.003 1.003 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.243 0.757 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.189 0.811 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.401 0.599 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 -10.719 6.564 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.329 5.329 3 C -0.380 4.380 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.228 1.228 10 H -0.189 1.189 11 C 0.087 3.913 12 C -0.208 4.208 13 C -0.069 4.069 14 N -0.191 5.191 15 H 0.268 0.732 16 C -0.037 4.037 17 C -0.133 4.133 18 C -0.150 4.150 19 C 0.016 3.984 20 O -0.319 6.319 21 C -0.132 4.132 22 C -0.110 4.110 23 H 0.016 0.984 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.258 0.742 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.249 -11.095 6.459 13.523 hybrid contribution -0.046 1.717 0.314 1.746 sum 4.202 -9.379 6.774 12.309 Atomic orbital electron populations 1.20426 0.83202 0.95106 0.97007 1.44266 1.01847 1.01529 1.85269 1.19599 0.98255 0.86160 1.34029 0.90458 1.25801 0.98562 1.01790 0.99095 1.70276 1.19341 1.26951 1.42296 0.85255 0.78624 0.80007 0.76507 1.21517 1.22801 1.18897 1.19336 0.96116 0.86235 0.89629 1.21600 0.93222 1.05925 1.00054 1.21893 1.00311 1.00414 0.84290 1.41636 1.11311 1.52459 1.13654 0.73203 1.18567 0.86744 1.01971 0.96438 1.20161 0.94640 1.01060 0.97476 1.21214 0.94715 1.01996 0.97033 1.18196 0.86008 1.00637 0.93546 1.84765 1.13498 1.43926 1.89748 1.20827 0.94106 0.98765 0.99549 1.19236 0.94194 1.02618 0.94935 0.98444 0.96542 0.96253 0.94747 0.91642 0.93156 0.79414 0.82774 0.82707 0.74191 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.81 9.01 127.77 1.15 10.97 16 2 N -0.61 -31.17 2.91 -731.32 -2.13 -33.29 16 3 C -0.25 -13.70 9.67 84.03 0.81 -12.88 16 4 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 5 C -0.06 -3.30 5.13 84.86 0.44 -2.86 16 6 N -0.94 -57.17 10.57 21.65 0.23 -56.94 16 7 Si 0.97 45.39 29.57 68.60 2.03 47.42 16 8 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 C 0.21 8.97 6.24 85.63 0.53 9.50 16 12 C -0.20 -7.96 5.90 -18.62 -0.11 -8.07 16 13 C 0.06 1.92 11.73 83.01 0.97 2.89 16 14 N -0.59 -16.74 6.08 -187.52 -1.14 -17.88 16 15 H 0.43 8.53 8.96 -92.71 -0.83 7.70 16 16 C 0.07 2.34 7.27 38.98 0.28 2.62 16 17 C -0.11 -3.07 10.06 22.35 0.22 -2.85 16 18 C -0.13 -3.60 9.95 22.39 0.22 -3.38 16 19 C 0.06 2.02 6.69 22.47 0.15 2.17 16 20 O -0.51 -14.65 13.50 -93.35 -1.26 -15.91 16 21 C -0.11 -4.38 10.03 22.57 0.23 -4.15 16 22 C -0.10 -4.14 6.35 -20.20 -0.13 -4.27 16 23 H 0.00 -0.16 7.41 -2.39 -0.02 -0.18 16 24 H 0.02 0.90 7.19 -2.39 -0.02 0.89 16 25 H 0.02 0.88 7.82 -2.39 -0.02 0.86 16 26 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.07 2.51 8.03 -2.38 -0.02 2.50 16 28 H 0.05 2.01 7.86 -2.39 -0.02 1.99 16 29 H 0.19 5.11 8.06 -2.91 -0.02 5.08 16 30 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.40 8.13 9.07 -74.05 -0.67 7.46 16 33 H 0.11 4.35 8.03 -2.91 -0.02 4.33 16 Total: -1.00 -71.85 286.69 2.15 -69.70 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.36 Total: 17.22 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.78 Total: -10.31 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.04 Total: -108.12 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -1.26 Total: -15.91 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.85 2.15 -69.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232866311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.651 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds