Wall clock time and date at job start Sun Mar 29 2020 22:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00265 * 2 1 4 4 H 1.09000 * 109.46944 * 0.02562 * 3 2 1 5 5 C 1.53003 * 109.47165 * 239.99740 * 3 2 1 6 6 O 1.42898 * 109.47068 * 119.99919 * 3 2 1 7 7 C 1.35637 * 116.99957 * 205.03480 * 6 3 2 8 8 C 1.38663 * 120.16138 * 354.75781 * 7 6 3 9 9 C 1.38092 * 120.09193 * 180.02562 * 8 7 6 10 10 C 1.38689 * 120.41756 * 359.96360 * 9 8 7 11 11 C 1.37701 * 120.31752 * 359.97438 * 10 9 8 12 12 C 1.39836 * 119.90555 * 0.28342 * 11 10 9 13 13 C 1.47534 * 120.20699 * 179.72013 * 12 11 10 14 14 O 1.21810 * 119.99916 * 179.97438 * 13 12 11 15 15 C 1.41822 * 119.99829 * 359.97438 * 13 12 11 16 16 H 1.08002 * 120.00365 * 6.78944 * 15 13 12 17 17 C 1.40332 * 119.99963 * 186.79156 * 15 13 12 18 18 N 1.30544 * 119.99641 * 353.87162 * 17 15 13 19 19 Si 1.86795 * 119.99988 * 173.86577 * 17 15 13 20 20 H 1.48508 * 109.47086 * 94.98627 * 19 17 15 21 21 H 1.48499 * 109.47314 * 214.98444 * 19 17 15 22 22 H 1.48502 * 109.47524 * 334.98933 * 19 17 15 23 23 H 1.07999 * 120.00386 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99613 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99962 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47043 * 300.00234 * 5 3 2 27 27 H 1.09003 * 109.46940 * 60.00084 * 5 3 2 28 28 H 1.08998 * 109.47181 * 179.97438 * 5 3 2 29 29 H 1.07997 * 119.95620 * 359.97438 * 8 7 6 30 30 H 1.07999 * 119.79115 * 179.97438 * 9 8 7 31 31 H 1.07993 * 119.83776 * 180.02562 * 10 9 8 32 32 H 1.08009 * 120.04450 * 180.02562 * 11 10 9 33 33 H 0.97001 * 119.99695 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9432 1.3860 -1.2492 6 8 2.8851 1.3807 1.1668 7 6 3.2137 2.6201 1.6092 8 6 2.8492 3.7403 0.8777 9 6 3.1850 5.0014 1.3292 10 6 3.8870 5.1589 2.5149 11 6 4.2565 4.0583 3.2554 12 6 3.9281 2.7748 2.8080 13 6 4.3260 1.5907 3.5930 14 8 4.0376 0.4744 3.2000 15 6 5.0443 1.7521 4.8051 16 1 5.2049 2.7404 5.2102 17 6 5.5466 0.6279 5.4782 18 7 5.2519 -0.5715 5.0554 19 14 6.6367 0.8476 6.9791 20 1 5.8073 0.7727 8.2086 21 1 7.6621 -0.2261 7.0076 22 1 7.3074 2.1710 6.9143 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9354 -0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 3.6515 0.5575 -1.2492 27 1 2.3166 1.3283 -2.1392 28 1 3.4879 2.3302 -1.2495 29 1 2.3026 3.6263 -0.0467 30 1 2.8990 5.8705 0.7554 31 1 4.1444 6.1495 2.8594 32 1 4.8028 4.1861 4.1783 33 1 5.5994 -1.3487 5.5204 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522033.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:56 Heat of formation + Delta-G solvation = -32.054581 kcal Electronic energy + Delta-G solvation = -17437.004074 eV Core-core repulsion = 14621.808369 eV Total energy + Delta-G solvation = -2815.195705 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.68226 -37.29573 -35.94589 -34.04149 -32.55738 -30.62607 -29.78539 -28.98353 -26.62581 -23.55608 -22.87673 -21.35171 -19.93988 -19.26725 -17.55388 -16.51268 -15.74506 -15.29547 -14.80524 -14.47646 -14.17309 -13.92976 -13.45083 -13.24767 -12.73013 -12.51881 -12.26877 -12.02418 -11.60603 -11.43502 -11.33131 -11.18143 -10.86556 -10.72857 -10.45756 -10.36610 -10.17863 -10.04168 -9.38706 -8.89817 -8.16387 -7.38917 -7.30048 -6.19867 -4.78565 1.84397 2.09605 2.30442 3.09121 3.17005 3.20869 3.99231 4.06648 4.12670 4.70459 4.91065 5.12343 5.28276 5.38329 5.43608 5.51913 5.65189 5.77391 5.81918 5.90732 5.96270 6.09717 6.22227 6.29162 6.38676 6.70502 6.73342 6.82546 6.97273 6.99184 7.20516 7.34216 7.53121 8.12190 8.20555 8.89079 8.94706 10.42477 10.66124 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.007529 C = 0.005914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.459236 B = 3718.026415 C = 4733.443149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.133 4.133 3 C 0.100 3.900 4 H 0.069 0.931 5 C -0.174 4.174 6 O -0.260 6.260 7 C 0.152 3.848 8 C -0.232 4.232 9 C -0.093 4.093 10 C -0.177 4.177 11 C -0.058 4.058 12 C -0.137 4.137 13 C 0.391 3.609 14 O -0.517 6.517 15 C -0.523 4.523 16 H 0.072 0.928 17 C 0.081 3.919 18 N -0.738 5.738 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.261 1.261 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.715 6.278 -7.850 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.151 4.151 3 C 0.043 3.957 4 H 0.087 0.913 5 C -0.231 4.231 6 O -0.172 6.172 7 C 0.105 3.895 8 C -0.250 4.250 9 C -0.111 4.111 10 C -0.195 4.195 11 C -0.077 4.077 12 C -0.139 4.139 13 C 0.285 3.715 14 O -0.405 6.405 15 C -0.555 4.555 16 H 0.090 0.910 17 C -0.142 4.142 18 N -0.368 5.368 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.185 1.185 23 H 0.122 0.878 24 H 0.113 0.887 25 H 0.137 0.863 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.815 5.345 -8.000 10.759 hybrid contribution 0.460 0.492 0.563 0.878 sum -4.356 5.838 -7.437 10.409 Atomic orbital electron populations 1.23818 0.95552 1.01922 1.00764 1.22744 0.95485 0.97935 0.98955 1.21460 0.92189 0.96201 0.85818 0.91348 1.22312 1.00592 1.03396 0.96791 1.86551 1.64240 1.24651 1.41723 1.19427 0.93749 0.83610 0.92713 1.21117 1.08713 0.92952 1.02245 1.20807 0.98174 0.95874 0.96276 1.20941 1.03404 0.98452 0.96737 1.21405 0.96563 0.90769 0.98939 1.21564 0.99851 0.98344 0.94171 1.17991 0.81684 0.85804 0.86043 1.90548 1.53047 1.25497 1.71358 1.20891 1.33185 0.93863 1.07522 0.90991 1.25959 0.95566 0.94722 0.97915 1.69981 1.33144 0.98603 1.35022 0.86411 0.80065 0.79200 0.81560 1.19587 1.20199 1.18511 0.87836 0.88724 0.86304 0.91182 0.91582 0.91764 0.86252 0.86963 0.86796 0.84783 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.01 0.42 -2.00 16 2 C -0.13 -2.10 9.15 -36.03 -0.33 -2.43 16 3 C 0.10 1.70 2.60 -27.88 -0.07 1.62 16 4 H 0.07 1.05 5.94 -51.93 -0.31 0.74 16 5 C -0.17 -2.48 9.16 37.16 0.34 -2.14 16 6 O -0.26 -5.98 7.86 -40.44 -0.32 -6.29 16 7 C 0.15 3.40 6.62 -38.61 -0.26 3.15 16 8 C -0.23 -4.17 8.24 -39.48 -0.33 -4.49 16 9 C -0.09 -1.52 10.04 -39.47 -0.40 -1.92 16 10 C -0.18 -3.05 10.02 -39.61 -0.40 -3.45 16 11 C -0.06 -1.21 9.43 -39.18 -0.37 -1.58 16 12 C -0.14 -3.39 5.90 -104.69 -0.62 -4.01 16 13 C 0.39 11.50 6.90 -34.42 -0.24 11.26 16 14 O -0.52 -16.96 13.74 -16.74 -0.23 -17.19 16 15 C -0.52 -14.73 8.83 -37.43 -0.33 -15.06 16 16 H 0.07 1.83 6.07 -52.49 -0.32 1.51 16 17 C 0.08 2.23 5.49 -17.31 -0.10 2.13 16 18 N -0.74 -21.74 11.76 55.57 0.65 -21.09 16 19 Si 0.90 19.64 29.57 -169.99 -5.03 14.62 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 23 H 0.10 1.17 8.06 -52.49 -0.42 0.74 16 24 H 0.09 1.13 7.83 -52.48 -0.41 0.72 16 25 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.92 6.94 -51.93 -0.36 0.56 16 29 H 0.12 1.81 5.44 -52.49 -0.29 1.53 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.13 2.65 6.23 -52.48 -0.33 2.33 16 33 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -33.91 286.20 -6.96 -40.87 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -3.68 Total: 3.70 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.67 Total: -18.92 kcal Atomic # 7 Polarization: -21.74 SS G_CDS: 0.65 Total: -21.09 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.55 Total: -23.48 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.91 -6.96 -40.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522033.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.813 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds