Wall clock time and date at job start Sun Mar 29 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34713 * 125.81287 * 2 1 4 4 C 1.37905 * 107.38213 * 180.26447 * 3 2 1 5 5 C 1.47899 * 126.37526 * 180.02562 * 4 3 2 6 6 C 1.39164 * 120.24832 * 309.67509 * 5 4 3 7 7 C 1.37980 * 120.12722 * 179.69575 * 6 5 4 8 8 C 1.39211 * 120.65283 * 0.60715 * 7 6 5 9 9 F 1.35098 * 119.74424 * 179.69616 * 8 7 6 10 10 C 1.37590 * 120.50758 * 359.67204 * 8 7 6 11 11 C 1.40735 * 119.84589 * 0.02562 * 10 8 7 12 12 C 1.40873 * 120.31652 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99457 * 153.28856 * 12 11 10 14 14 C 1.39990 * 120.00462 * 333.29319 * 12 11 10 15 15 N 1.30829 * 119.99768 * 344.27350 * 14 12 11 16 16 Si 1.86801 * 120.00407 * 164.27791 * 14 12 11 17 17 H 1.48493 * 109.47163 * 89.99741 * 16 14 12 18 18 H 1.48502 * 109.46901 * 209.99940 * 16 14 12 19 19 H 1.48499 * 109.46841 * 329.99576 * 16 14 12 20 20 C 1.41127 * 107.25440 * 0.02562 * 4 3 2 21 21 N 1.30543 * 108.11942 * 359.97438 * 20 4 3 22 22 H 1.08998 * 109.46970 * 269.71864 * 1 2 3 23 23 H 1.09006 * 109.46637 * 29.71630 * 1 2 3 24 24 H 1.08999 * 109.47432 * 149.71123 * 1 2 3 25 25 H 1.08006 * 126.31116 * 0.23768 * 3 2 1 26 26 H 1.07997 * 119.93333 * 359.97438 * 6 5 4 27 27 H 1.08006 * 119.67152 * 180.29823 * 7 6 5 28 28 H 1.08000 * 120.08082 * 180.02562 * 10 8 7 29 29 H 0.96998 * 119.99846 * 179.97438 * 15 14 12 30 30 H 1.08003 * 125.94188 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2533 1.0924 0.0000 4 6 3.5616 0.6564 -0.0061 5 6 4.7702 1.5089 -0.0078 6 6 4.8975 2.5430 -0.9303 7 6 6.0233 3.3407 -0.9256 8 6 7.0485 3.1159 -0.0111 9 9 8.1455 3.9043 -0.0268 10 6 6.9530 2.0973 0.9090 11 6 5.8112 1.2748 0.9272 12 6 5.7028 0.2294 1.8652 13 1 4.7287 -0.1118 2.1832 14 6 6.8576 -0.3671 2.3852 15 7 8.0107 -0.1845 1.7948 16 14 6.7521 -1.4239 3.9220 17 1 6.4971 -2.8349 3.5359 18 1 8.0322 -1.3389 4.6699 19 1 5.6432 -0.9377 4.7818 20 6 3.5326 -0.7545 -0.0104 21 7 2.2839 -1.1350 -0.0065 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 0.8926 -0.5095 24 1 -0.3634 -0.8874 -0.5183 25 1 1.9218 2.1203 0.0036 26 1 4.1114 2.7243 -1.6483 27 1 6.1122 4.1443 -1.6417 28 1 7.7523 1.9294 1.6156 29 1 8.8109 -0.5976 2.1553 30 1 4.3938 -1.4063 -0.0159 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240296827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:53 Heat of formation + Delta-G solvation = 42.805969 kcal Electronic energy + Delta-G solvation = -16961.465093 eV Core-core repulsion = 14058.348031 eV Total energy + Delta-G solvation = -2903.117062 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.61865 -40.34214 -37.26549 -33.74014 -32.83539 -30.56876 -29.77280 -27.98410 -26.00712 -25.20090 -21.62213 -21.20201 -20.04028 -19.28729 -17.58363 -16.42243 -15.84188 -14.99195 -14.83096 -14.53179 -14.35220 -14.28015 -13.62745 -12.98340 -12.72551 -12.48927 -12.42505 -12.10484 -11.82803 -11.59670 -11.29888 -11.11546 -10.73717 -10.43607 -10.26985 -9.80590 -9.61531 -9.25951 -8.77376 -7.97746 -7.57612 -7.02038 -6.74622 -4.46224 2.32992 2.68055 2.78372 3.04508 3.07042 3.08141 3.15345 3.70963 3.87413 4.49687 4.90960 5.31170 5.40496 5.51213 5.53680 5.69949 5.75982 6.15058 6.32069 6.39567 6.53103 6.66019 6.95348 6.99227 7.18421 7.32697 7.50703 7.59008 7.69620 7.81612 7.92966 8.18090 8.39438 8.50371 8.75536 8.81809 10.06957 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.010249 C = 0.006465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.469472 B = 2731.193916 C = 4329.680867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.388 5.388 3 C 0.023 3.977 4 C -0.129 4.129 5 C -0.142 4.142 6 C -0.054 4.054 7 C -0.277 4.277 8 C 0.103 3.897 9 F -0.169 7.169 10 C -0.196 4.196 11 C 0.144 3.856 12 C -0.441 4.441 13 H 0.086 0.914 14 C 0.075 3.925 15 N -0.784 5.784 16 Si 0.907 3.093 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.260 1.260 20 C 0.075 3.925 21 N -0.321 5.321 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.166 0.834 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.284 0.716 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 0.612 -1.053 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.172 5.172 3 C -0.121 4.121 4 C -0.140 4.140 5 C -0.145 4.145 6 C -0.073 4.073 7 C -0.297 4.297 8 C 0.084 3.916 9 F -0.148 7.148 10 C -0.216 4.216 11 C 0.141 3.859 12 C -0.470 4.470 13 H 0.104 0.896 14 C -0.144 4.144 15 N -0.408 5.408 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.111 4.111 21 N -0.142 5.142 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.183 0.817 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.171 -0.430 -1.037 9.239 hybrid contribution 0.822 0.416 0.658 1.131 sum -8.349 -0.015 -0.379 8.358 Atomic orbital electron populations 1.21643 0.75513 1.03539 1.02536 1.48047 1.05824 1.04114 1.59174 1.22790 0.91046 0.92482 1.05785 1.19075 0.91558 0.92558 1.10799 1.17984 0.95975 1.00101 1.00426 1.20354 0.95720 0.94334 0.96901 1.20164 0.97236 1.06682 1.05649 1.17754 0.83304 0.91681 0.98898 1.91327 1.53253 1.73871 1.96351 1.21212 1.02449 0.96154 1.01835 1.17272 0.88936 0.90423 0.89298 1.19524 0.93708 1.14220 1.19553 0.89636 1.25990 0.94753 0.96340 0.97330 1.69810 1.00150 1.35287 1.35596 0.86319 0.78907 0.80253 0.81462 1.19216 1.20026 1.18388 1.24081 0.93990 0.95386 0.97624 1.77007 1.02431 1.08165 1.26606 0.91599 0.90233 0.90044 0.81680 0.88492 0.88338 0.85369 0.90521 0.79939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.20 11.45 59.85 0.69 1.88 16 2 N -0.39 -6.49 4.00 -67.52 -0.27 -6.76 16 3 C 0.02 0.41 11.44 -16.41 -0.19 0.22 16 4 C -0.13 -2.69 4.96 -104.97 -0.52 -3.21 16 5 C -0.14 -3.27 5.82 -104.21 -0.61 -3.88 16 6 C -0.05 -1.17 9.69 -39.33 -0.38 -1.55 16 7 C -0.28 -6.20 10.01 -39.31 -0.39 -6.59 16 8 C 0.10 2.51 7.28 -39.46 -0.29 2.22 16 9 F -0.17 -4.00 17.26 2.25 0.04 -3.96 16 10 C -0.20 -5.06 8.63 -38.88 -0.34 -5.39 16 11 C 0.14 3.64 5.57 -106.57 -0.59 3.05 16 12 C -0.44 -11.00 7.73 -37.93 -0.29 -11.29 16 13 H 0.09 2.12 6.70 -52.48 -0.35 1.77 16 14 C 0.08 1.80 5.17 -17.32 -0.09 1.71 16 15 N -0.78 -19.51 10.98 55.55 0.61 -18.90 16 16 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C 0.08 1.55 10.37 -17.00 -0.18 1.38 16 21 N -0.32 -6.28 12.51 30.84 0.39 -5.89 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.17 2.39 8.06 -52.48 -0.42 1.97 16 26 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.13 3.43 6.24 -52.49 -0.33 3.10 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.18 3.75 7.95 -52.48 -0.42 3.34 16 LS Contribution 271.54 15.07 4.09 4.09 Total: -1.00 -28.28 271.54 -6.12 -34.40 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -2.77 Total: 5.28 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -3.18 Total: -21.45 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.73 Total: -31.55 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.28 -6.12 -34.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240296827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.210 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds