Wall clock time and date at job start Sun Mar 29 2020 22:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86793 * 120.00454 * 2 1 4 4 H 1.48505 * 109.46991 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47362 * 119.99859 * 3 2 1 6 6 H 1.48501 * 109.47411 * 240.00462 * 3 2 1 7 7 C 1.38662 * 119.99828 * 179.72523 * 2 1 3 8 8 H 1.07996 * 119.99720 * 179.97438 * 7 2 1 9 9 O 1.34805 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.35702 * 116.99933 * 174.94173 * 9 7 2 11 11 C 1.39459 * 120.36799 * 5.51012 * 10 9 7 12 12 C 1.38163 * 118.47395 * 180.02562 * 11 10 9 13 13 C 1.39639 * 119.12805 * 359.97438 * 12 11 10 14 14 C 1.47678 * 119.66465 * 179.97438 * 13 12 11 15 15 C 1.31594 * 118.47649 * 185.18805 * 14 13 12 16 16 C 1.50331 * 122.66557 * 180.31578 * 15 14 13 17 17 C 1.53072 * 109.70172 * 343.46420 * 16 15 14 18 18 N 1.47219 * 108.53399 * 49.22391 * 17 16 15 19 19 C 1.46985 * 110.11609 * 290.52029 * 18 17 16 20 20 N 1.32837 * 120.66362 * 0.02562 * 13 12 11 21 21 C 1.31634 * 121.66040 * 359.70682 * 20 13 12 22 22 H 0.97001 * 120.00159 * 179.97438 * 1 2 3 23 23 H 1.08002 * 120.76434 * 0.02562 * 11 10 9 24 24 H 1.07994 * 120.43746 * 179.97438 * 12 11 10 25 25 H 1.07997 * 118.66585 * 0.28952 * 15 14 13 26 26 H 1.09010 * 109.43266 * 103.53717 * 16 15 14 27 27 H 1.09002 * 109.43423 * 223.43893 * 16 15 14 28 28 H 1.09002 * 109.62707 * 168.93268 * 17 16 15 29 29 H 1.08998 * 109.62991 * 289.50909 * 17 16 15 30 30 H 1.00903 * 111.00380 * 167.24253 * 18 17 16 31 31 H 1.09004 * 109.53523 * 291.24195 * 19 18 17 32 32 H 1.08994 * 109.24071 * 171.66367 * 19 18 17 33 33 H 1.08002 * 119.59226 * 180.28792 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 1.2847 2.7464 0.0006 5 1 3.1034 1.6963 1.2125 6 1 3.1033 1.6963 -1.2125 7 6 2.0088 -1.2009 0.0058 8 1 3.0888 -1.2008 0.0053 9 8 1.3347 -2.3682 0.0108 10 6 2.0697 -3.5045 -0.0903 11 6 3.4630 -3.4463 -0.0783 12 6 4.1726 -4.6271 -0.1842 13 6 3.4750 -5.8314 -0.2984 14 6 4.2215 -7.1004 -0.4129 15 6 3.5451 -8.2094 -0.6232 16 6 4.2080 -9.5529 -0.7479 17 6 5.7053 -9.3675 -1.0067 18 7 6.2362 -8.4133 -0.0193 19 6 5.7177 -7.0648 -0.2899 20 7 2.1467 -5.8468 -0.3062 21 6 1.4423 -4.7397 -0.2018 22 1 -0.4850 -0.8400 -0.0004 23 1 3.9757 -2.5000 0.0118 24 1 5.2525 -4.6188 -0.1787 25 1 2.4701 -8.1522 -0.7094 26 1 4.0664 -10.1143 0.1757 27 1 3.7625 -10.1016 -1.5777 28 1 6.2162 -10.3246 -0.9022 29 1 5.8573 -8.9761 -2.0125 30 1 7.2452 -8.4184 -0.0176 31 1 6.1473 -6.6887 -1.2185 32 1 5.9969 -6.4016 0.5288 33 1 0.3635 -4.7914 -0.2072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240657341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:06 Heat of formation + Delta-G solvation = 15.844040 kcal Electronic energy + Delta-G solvation = -16872.105531 eV Core-core repulsion = 14091.279617 eV Total energy + Delta-G solvation = -2780.825914 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83889 -38.47132 -37.13085 -32.87905 -32.18937 -31.85199 -30.97955 -28.19431 -25.27384 -24.48059 -23.29823 -22.22579 -21.46436 -18.72289 -17.72548 -17.26344 -16.53061 -15.86654 -14.98423 -14.63319 -14.50902 -14.17436 -13.97892 -13.77279 -13.48735 -13.21997 -12.67734 -12.61392 -12.51213 -12.07240 -11.66503 -11.05562 -11.00272 -10.70897 -10.42372 -10.39043 -9.93177 -9.28978 -9.10303 -8.83097 -8.73890 -8.53749 -7.23616 -6.95683 -4.22617 1.54412 1.99138 2.87159 3.15271 3.21223 3.36534 3.97121 4.08158 4.58231 4.70901 4.82403 4.94200 5.02226 5.09684 5.31734 5.40037 5.40619 5.45836 5.59699 5.68451 5.73964 5.80204 5.94448 6.03860 6.19743 6.42763 6.65100 6.76136 6.85816 6.93534 7.20663 7.29968 7.32430 7.39218 8.19260 8.65315 8.73084 9.36446 10.47941 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.052332 B = 0.004493 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.912585 B = 6229.981301 C = 6711.063352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.014 3.986 3 Si 1.096 2.904 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.473 4.473 8 H 0.086 0.914 9 O -0.186 6.186 10 C 0.107 3.893 11 C -0.196 4.196 12 C -0.107 4.107 13 C 0.047 3.953 14 C -0.066 4.066 15 C -0.139 4.139 16 C -0.083 4.083 17 C 0.051 3.949 18 N -0.683 5.683 19 C 0.097 3.903 20 N -0.435 5.435 21 C 0.031 3.969 22 H 0.285 0.715 23 H 0.138 0.862 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.342 0.658 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.914 -11.923 -1.791 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.193 4.193 3 Si 0.919 3.081 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.549 4.549 8 H 0.103 0.897 9 O -0.088 6.088 10 C 0.050 3.950 11 C -0.222 4.222 12 C -0.127 4.127 13 C -0.088 4.088 14 C -0.067 4.067 15 C -0.159 4.159 16 C -0.121 4.121 17 C -0.078 4.078 18 N -0.314 5.314 19 C -0.032 4.032 20 N -0.145 5.145 21 C -0.132 4.132 22 H 0.095 0.905 23 H 0.155 0.845 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.159 0.841 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.532 -11.082 -1.360 14.681 hybrid contribution 1.268 -0.505 -0.683 1.526 sum 10.799 -11.588 -2.043 15.971 Atomic orbital electron populations 1.70574 1.06612 1.31959 1.40848 1.26652 0.96782 1.01249 0.94647 0.83102 0.74573 0.73125 0.77258 1.19560 1.20533 1.20565 1.22291 0.93270 0.82052 1.57239 0.89675 1.83640 1.35447 1.12145 1.77572 1.20396 0.91029 0.88727 0.94866 1.21482 0.93833 0.99088 1.07805 1.21756 0.99744 0.92283 0.98933 1.19265 0.89297 0.92047 1.08165 1.19265 0.93027 0.91894 1.02540 1.22537 1.00470 0.92821 1.00106 1.20519 0.93813 0.95844 1.01880 1.22050 0.96275 0.96134 0.93337 1.60782 1.12886 1.06563 1.51158 1.20682 0.92184 0.90290 1.00042 1.67367 1.07333 1.29578 1.10201 1.21714 0.99570 0.85377 1.06515 0.90514 0.84462 0.86207 0.86061 0.90381 0.91015 0.90758 0.94805 0.84064 0.94018 0.89617 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.11 13.70 55.48 0.76 -24.35 16 2 C 0.01 0.37 5.49 -17.51 -0.10 0.27 16 3 Si 1.10 22.71 29.92 -169.99 -5.09 17.63 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.84 9.49 30.89 0.29 -12.54 16 8 H 0.09 2.16 5.25 -52.49 -0.28 1.88 16 9 O -0.19 -5.08 9.16 0.27 0.00 -5.08 16 10 C 0.11 2.55 6.67 -38.85 -0.26 2.29 16 11 C -0.20 -4.23 9.25 -39.15 -0.36 -4.59 16 12 C -0.11 -2.02 9.32 -39.09 -0.36 -2.38 16 13 C 0.05 0.91 6.69 -83.05 -0.56 0.36 16 14 C -0.07 -1.08 5.86 -102.88 -0.60 -1.68 16 15 C -0.14 -2.13 9.51 -36.34 -0.35 -2.48 16 16 C -0.08 -0.97 6.32 -28.02 -0.18 -1.15 16 17 C 0.05 0.53 6.61 -3.61 -0.02 0.51 16 18 N -0.68 -7.72 6.92 -115.00 -0.80 -8.52 16 19 C 0.10 1.27 5.43 -5.18 -0.03 1.24 16 20 N -0.44 -9.10 9.10 -9.71 -0.09 -9.18 16 21 C 0.03 0.69 11.14 -17.36 -0.19 0.50 16 22 H 0.28 8.38 7.97 -40.82 -0.33 8.06 16 23 H 0.14 2.89 5.75 -52.49 -0.30 2.59 16 24 H 0.12 1.84 6.64 -52.49 -0.35 1.49 16 25 H 0.12 2.01 7.12 -52.49 -0.37 1.64 16 26 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 30 H 0.34 2.96 8.90 -39.29 -0.35 2.61 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.10 7.25 -51.93 -0.38 0.72 16 33 H 0.15 3.02 8.06 -52.49 -0.42 2.59 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -30.29 279.48 -7.39 -37.68 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -3.68 Total: 7.26 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.71 Total: -19.66 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.12 Total: -42.05 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: 0.00 Total: -5.08 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.09 Total: 17.63 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.29 -7.39 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240657341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.528 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds