Wall clock time and date at job start Sun Mar 29 2020 22:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86793 * 120.00343 * 2 1 4 4 H 1.48504 * 109.47265 * 275.40226 * 3 2 1 5 5 H 1.48495 * 109.47079 * 35.40147 * 3 2 1 6 6 H 1.48504 * 109.47400 * 155.39913 * 3 2 1 7 7 C 1.39939 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99602 * 342.11491 * 7 2 1 9 9 C 1.41316 * 119.99921 * 161.83939 * 7 2 1 10 10 C 1.40794 * 120.19674 * 329.91603 * 9 7 2 11 11 C 1.37652 * 120.05986 * 179.71354 * 10 9 7 12 12 C 1.38461 * 120.47366 * 0.56123 * 11 10 9 13 13 C 1.39738 * 120.40311 * 359.71496 * 12 11 10 14 14 C 1.47805 * 120.03670 * 180.02562 * 13 12 11 15 15 C 1.31108 * 118.07345 * 104.98128 * 14 13 12 16 16 C 1.50081 * 123.85198 * 180.45386 * 15 14 13 17 17 C 1.53017 * 110.13963 * 342.81245 * 16 15 14 18 18 C 1.53366 * 108.49046 * 49.68398 * 17 16 15 19 19 C 1.50090 * 118.07557 * 284.71133 * 14 13 12 20 20 C 1.39309 * 119.92604 * 359.97438 * 13 12 11 21 21 F 1.35096 * 120.23683 * 180.02562 * 20 13 12 22 22 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 23 23 H 1.07996 * 119.97253 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.76168 * 180.24890 * 11 10 9 25 25 H 1.07997 * 119.79547 * 179.73328 * 12 11 10 26 26 H 1.07999 * 118.07296 * 0.42880 * 15 14 13 27 27 H 1.08998 * 109.35863 * 103.02035 * 16 15 14 28 28 H 1.08997 * 109.36130 * 222.60834 * 16 15 14 29 29 H 1.08997 * 109.63135 * 169.38053 * 17 16 15 30 30 H 1.08998 * 109.62986 * 289.98185 * 17 16 15 31 31 H 1.09002 * 109.63712 * 51.79545 * 18 17 16 32 32 H 1.08993 * 109.63505 * 172.19572 * 18 17 16 33 33 H 1.08991 * 109.36155 * 283.04724 * 19 14 13 34 34 H 1.09000 * 109.35270 * 42.64064 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3759 2.1122 -1.3939 5 1 1.5018 2.6169 0.8110 6 1 3.5925 1.4098 0.5828 7 6 2.0081 -1.2120 -0.0005 8 1 1.5071 -2.1247 0.2863 9 6 3.3685 -1.2423 -0.3820 10 6 3.8628 -0.3124 -1.3164 11 6 5.1897 -0.3408 -1.6816 12 6 6.0457 -1.2876 -1.1447 13 6 5.5746 -2.2234 -0.2200 14 6 6.4955 -3.2301 0.3484 15 6 6.9050 -3.0643 1.5828 16 6 7.8463 -3.9995 2.2840 17 6 7.9079 -5.3377 1.5444 18 6 8.1511 -5.0599 0.0559 19 6 6.9020 -4.3853 -0.5193 20 6 4.2362 -2.2058 0.1662 21 9 3.7742 -3.1073 1.0600 22 1 -0.4850 0.8400 -0.0004 23 1 3.2014 0.4265 -1.7440 24 1 5.5647 0.3773 -2.3957 25 1 7.0838 -1.3026 -1.4421 26 1 6.5440 -2.2041 2.1268 27 1 8.8417 -3.5562 2.3124 28 1 7.4979 -4.1658 3.3033 29 1 8.7249 -5.9391 1.9430 30 1 6.9640 -5.8684 1.6685 31 1 9.0124 -4.4016 -0.0580 32 1 8.3360 -5.9985 -0.4664 33 1 6.0864 -5.1067 -0.5660 34 1 7.1195 -4.0233 -1.5242 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241716237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:09 Heat of formation + Delta-G solvation = -39.101374 kcal Electronic energy + Delta-G solvation = -17448.075042 eV Core-core repulsion = 14644.946554 eV Total energy + Delta-G solvation = -2803.128488 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.112 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.35341 -38.58541 -37.11163 -33.84123 -32.03516 -30.50894 -30.09046 -28.05732 -25.20778 -23.20195 -22.44657 -20.81914 -20.66496 -17.88827 -16.95463 -16.45760 -15.47583 -15.30096 -14.70585 -14.29075 -14.13923 -13.64520 -13.56260 -13.22175 -12.91492 -12.58730 -12.20415 -12.09176 -12.03224 -11.87047 -11.49734 -11.04072 -10.88938 -10.67749 -10.47643 -10.30938 -10.07898 -9.91197 -9.65579 -9.21328 -8.38774 -7.69701 -7.48392 -7.02989 -4.55998 2.26223 2.44701 2.70129 3.04746 3.15539 3.26186 3.91432 4.34169 4.92297 4.97215 5.04381 5.20294 5.44666 5.57960 5.64536 5.69757 5.74542 5.77736 5.96091 5.98738 6.05747 6.17892 6.19468 6.25320 6.39390 6.44572 6.46213 6.74369 6.93521 7.08156 7.28161 7.38857 7.42291 7.56202 7.68326 7.93019 8.26891 8.50824 8.66917 9.98963 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036573 B = 0.006635 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.408719 B = 4218.916074 C = 4494.220553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.094 0.906 9 C 0.066 3.934 10 C -0.222 4.222 11 C -0.086 4.086 12 C -0.209 4.209 13 C -0.057 4.057 14 C -0.064 4.064 15 C -0.159 4.159 16 C -0.082 4.082 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.077 4.077 20 C 0.003 3.997 21 F -0.152 7.152 22 H 0.287 0.713 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.113 -3.963 0.503 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.167 1.167 7 C -0.467 4.467 8 H 0.112 0.888 9 C 0.063 3.937 10 C -0.241 4.241 11 C -0.104 4.104 12 C -0.228 4.228 13 C -0.058 4.058 14 C -0.064 4.064 15 C -0.177 4.177 16 C -0.119 4.119 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.114 4.114 20 C -0.017 4.017 21 F -0.131 7.131 22 H 0.098 0.902 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.787 -3.907 0.562 12.430 hybrid contribution -0.062 0.741 0.096 0.749 sum 11.724 -3.166 0.659 12.162 Atomic orbital electron populations 1.69692 1.08101 1.30458 1.34217 1.26154 0.94767 1.01697 0.90855 0.86304 0.81398 0.79596 0.79002 1.19381 1.21540 1.16655 1.19401 0.92697 0.96490 1.38125 0.88759 1.17652 0.93212 0.91307 0.91562 1.20894 0.95708 1.04357 1.03131 1.20563 0.93611 0.97534 0.98691 1.20240 0.98480 1.00048 1.04041 1.18638 0.91468 0.96810 0.98866 1.19614 0.96995 0.95193 0.94589 1.22235 0.99979 1.00269 0.95233 1.20364 0.98432 0.94419 0.98690 1.21607 1.01612 0.97062 0.95557 1.21612 0.97905 1.00070 0.95845 1.20387 0.97270 0.95415 0.98370 1.17826 0.91194 0.95875 0.96772 1.91306 1.89459 1.66089 1.66249 0.90231 0.87518 0.88170 0.87983 0.87934 0.91421 0.91427 0.92174 0.91704 0.91919 0.92001 0.90933 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.38 13.93 55.55 0.77 -20.60 16 2 C 0.08 2.24 5.40 -17.33 -0.09 2.15 16 3 Si 0.91 20.64 24.52 -169.99 -4.17 16.47 16 4 H -0.27 -5.79 6.71 56.52 0.38 -5.41 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.24 -5.67 6.87 56.52 0.39 -5.28 16 7 C -0.44 -12.20 9.25 -37.78 -0.35 -12.55 16 8 H 0.09 2.80 7.98 -52.49 -0.42 2.38 16 9 C 0.07 1.73 5.10 -106.80 -0.54 1.18 16 10 C -0.22 -5.29 7.16 -38.83 -0.28 -5.57 16 11 C -0.09 -1.81 10.00 -39.71 -0.40 -2.21 16 12 C -0.21 -4.28 9.78 -38.94 -0.38 -4.66 16 13 C -0.06 -1.23 5.03 -105.03 -0.53 -1.76 16 14 C -0.06 -1.17 4.84 -102.75 -0.50 -1.66 16 15 C -0.16 -2.70 9.47 -36.35 -0.34 -3.05 16 16 C -0.08 -1.08 6.11 -28.17 -0.17 -1.25 16 17 C -0.12 -1.45 6.00 -26.53 -0.16 -1.61 16 18 C -0.12 -1.42 6.01 -26.45 -0.16 -1.58 16 19 C -0.08 -1.18 5.80 -28.09 -0.16 -1.35 16 20 C 0.00 0.09 7.27 -38.22 -0.28 -0.19 16 21 F -0.15 -3.85 16.33 2.25 0.04 -3.81 16 22 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 23 H 0.11 2.50 4.75 -52.49 -0.25 2.25 16 24 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 25 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.10 1.87 7.94 -52.49 -0.42 1.46 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -27.75 282.86 -7.92 -35.67 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.48 Total: 2.10 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: -4.35 Total: -34.10 kcal Atomic # 7 Polarization: -21.38 SS G_CDS: 0.77 Total: -20.60 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.17 Total: 16.47 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.75 -7.92 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241716237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.428 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds