Wall clock time and date at job start Sun Mar 29 2020 22:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30770 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48503 * 109.47243 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47145 * 119.99511 * 3 2 1 6 6 H 1.48498 * 109.47521 * 239.99699 * 3 2 1 7 7 C 1.40105 * 120.00169 * 179.72266 * 2 1 3 8 8 H 1.07998 * 120.00385 * 203.90648 * 7 2 1 9 9 C 1.40674 * 119.99668 * 23.89740 * 7 2 1 10 10 C 1.41155 * 120.63152 * 37.73423 * 9 7 2 11 11 F 1.35093 * 120.11485 * 359.97438 * 10 9 7 12 12 C 1.37614 * 119.77281 * 179.97438 * 10 9 7 13 13 C 1.38704 * 121.17179 * 359.97438 * 12 10 9 14 14 C 1.37940 * 121.33917 * 0.04534 * 13 12 10 15 15 C 1.39450 * 120.11403 * 359.68519 * 14 13 12 16 16 C 1.47159 * 120.56726 * 180.30097 * 15 14 13 17 17 C 1.31701 * 118.11043 * 105.23849 * 16 15 14 18 18 C 1.50102 * 123.77152 * 180.43980 * 17 16 15 19 19 C 1.53016 * 110.13255 * 342.81013 * 18 17 16 20 20 C 1.53364 * 108.51298 * 49.76636 * 19 18 17 21 21 C 1.50097 * 118.11937 * 284.97781 * 16 15 14 22 22 H 0.96997 * 120.00294 * 185.81043 * 1 2 3 23 23 H 1.07999 * 119.41802 * 180.02562 * 12 10 9 24 24 H 1.07992 * 119.33081 * 180.02562 * 13 12 10 25 25 H 1.07999 * 119.94721 * 179.97438 * 14 13 12 26 26 H 1.07997 * 118.11401 * 0.42288 * 17 16 15 27 27 H 1.08995 * 109.35777 * 103.01072 * 18 17 16 28 28 H 1.08996 * 109.36204 * 222.60438 * 18 17 16 29 29 H 1.08997 * 109.62563 * 169.48062 * 19 18 17 30 30 H 1.09000 * 109.62760 * 290.05954 * 19 18 17 31 31 H 1.08999 * 109.62733 * 51.63289 * 20 19 18 32 32 H 1.09001 * 109.62865 * 172.02084 * 20 19 18 33 33 H 1.09003 * 109.36020 * 283.03639 * 21 16 15 34 34 H 1.09003 * 109.35816 * 42.62561 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 1.2767 2.7465 -0.0006 5 1 3.0954 1.6964 1.2126 6 1 3.0955 1.6964 -1.2124 7 6 2.0083 -1.2133 0.0059 8 1 3.0188 -1.2516 0.3851 9 6 1.3953 -2.3817 -0.4820 10 6 0.5465 -2.3318 -1.6087 11 9 0.3142 -1.1554 -2.2308 12 6 -0.0436 -3.4858 -2.0714 13 6 0.1801 -4.7055 -1.4500 14 6 1.0004 -4.8083 -0.3457 15 6 1.6307 -3.6744 0.1656 16 6 2.5131 -3.7738 1.3392 17 6 3.8136 -3.6981 1.1459 18 6 4.8279 -3.7935 2.2482 19 6 4.1568 -3.5590 3.6032 20 6 2.9166 -4.4565 3.6941 21 6 1.8789 -3.9495 2.6882 22 1 -0.4850 -0.8357 0.0850 23 1 -0.6916 -3.4411 -2.9342 24 1 -0.2979 -5.5926 -1.8383 25 1 1.1585 -5.7694 0.1208 26 1 4.1708 -3.5598 0.1361 27 1 5.2821 -4.7843 2.2365 28 1 5.6017 -3.0417 2.0933 29 1 4.8514 -3.8117 4.4043 30 1 3.8596 -2.5138 3.6886 31 1 3.1903 -5.4845 3.4565 32 1 2.5048 -4.4110 4.7023 33 1 1.4790 -2.9936 3.0268 34 1 1.0668 -4.6727 2.6142 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241719876.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:31 Heat of formation + Delta-G solvation = -41.401630 kcal Electronic energy + Delta-G solvation = -17792.895549 eV Core-core repulsion = 14989.667315 eV Total energy + Delta-G solvation = -2803.228234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.112 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.17368 -38.35618 -36.60540 -33.86754 -31.70350 -30.24357 -29.23947 -27.91975 -25.01340 -22.89320 -22.10493 -20.98571 -20.27013 -17.94607 -17.16423 -16.04007 -15.04097 -14.80000 -14.55314 -14.02822 -13.96809 -13.82862 -13.34675 -12.93331 -12.75025 -12.34513 -12.16897 -11.91781 -11.78989 -11.46284 -11.19539 -10.74106 -10.66440 -10.49901 -10.46853 -10.37049 -10.04053 -9.79174 -9.30704 -8.96221 -8.01013 -7.53274 -7.38314 -7.16863 -4.49624 2.41462 2.67333 3.03667 3.16434 3.25187 3.37187 4.03279 4.52096 5.10533 5.19272 5.24663 5.27463 5.68946 5.84693 5.89696 5.93539 5.96173 5.97767 6.01666 6.19034 6.25850 6.30774 6.40744 6.42928 6.50407 6.67782 6.70192 6.94366 7.22700 7.33364 7.47002 7.65604 7.74005 7.75906 7.85659 7.95282 8.15275 8.64855 8.76457 10.04210 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.010749 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.339456 B = 2604.203170 C = 3754.805361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.086 0.914 9 C 0.084 3.916 10 C -0.021 4.021 11 F -0.150 7.150 12 C -0.114 4.114 13 C -0.232 4.232 14 C -0.079 4.079 15 C -0.160 4.160 16 C -0.021 4.021 17 C -0.180 4.180 18 C -0.078 4.078 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.078 4.078 22 H 0.293 0.707 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.896 -4.735 4.800 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.185 4.185 3 Si 0.889 3.111 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.041 4.041 11 F -0.129 7.129 12 C -0.133 4.133 13 C -0.251 4.251 14 C -0.097 4.097 15 C -0.162 4.162 16 C -0.021 4.021 17 C -0.198 4.198 18 C -0.115 4.115 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.115 4.115 22 H 0.106 0.894 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.618 -3.028 4.714 7.260 hybrid contribution -0.033 -1.543 -0.293 1.571 sum 4.585 -4.571 4.421 7.840 Atomic orbital electron populations 1.70375 1.08212 1.33863 1.27358 1.27005 0.95568 1.04263 0.91637 0.83614 0.75674 0.73884 0.77912 1.19795 1.20126 1.19951 1.20354 1.02584 0.92931 1.37307 0.89625 1.18635 0.90878 0.92777 0.89663 1.17743 1.08769 0.80792 0.96763 1.91360 1.93690 1.46160 1.81666 1.20518 1.00289 0.92501 1.00038 1.19916 1.07840 0.95757 1.01632 1.20622 0.96796 0.96155 0.96138 1.19718 1.05552 0.93011 0.97875 1.19273 0.92749 0.97253 0.92857 1.22246 0.93627 1.05495 0.98426 1.20311 0.97095 1.00694 0.93417 1.21590 0.96953 1.00415 0.96759 1.21605 0.96081 0.99141 0.98542 1.20409 0.97369 1.01309 0.92416 0.89400 0.88338 0.88556 0.88631 0.88373 0.92077 0.91909 0.92580 0.91655 0.92239 0.92373 0.90827 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.26 12.10 55.56 0.67 -20.59 16 2 C 0.04 1.00 4.38 -17.30 -0.08 0.93 16 3 Si 1.07 22.39 29.99 -169.99 -5.10 17.29 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 7 C -0.50 -13.29 8.21 -37.96 -0.31 -13.60 16 8 H 0.09 2.21 7.06 -52.49 -0.37 1.84 16 9 C 0.08 2.21 5.16 -104.55 -0.54 1.67 16 10 C -0.02 -0.54 6.16 -38.70 -0.24 -0.78 16 11 F -0.15 -4.13 14.57 2.25 0.03 -4.10 16 12 C -0.11 -2.68 9.94 -39.64 -0.39 -3.08 16 13 C -0.23 -5.04 9.98 -39.52 -0.39 -5.43 16 14 C -0.08 -1.71 9.78 -39.24 -0.38 -2.10 16 15 C -0.16 -3.73 5.23 -102.50 -0.54 -4.27 16 16 C -0.02 -0.43 4.55 -103.17 -0.47 -0.90 16 17 C -0.18 -3.42 8.65 -36.47 -0.32 -3.73 16 18 C -0.08 -1.18 6.11 -28.16 -0.17 -1.36 16 19 C -0.12 -1.69 5.99 -26.53 -0.16 -1.85 16 20 C -0.12 -1.66 6.01 -26.46 -0.16 -1.82 16 21 C -0.08 -1.38 5.79 -28.09 -0.16 -1.55 16 22 H 0.29 8.29 7.07 -40.82 -0.29 8.00 16 23 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 24 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 25 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.10 2.00 7.95 -52.49 -0.42 1.58 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -27.63 285.24 -8.93 -36.56 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.52 Total: 4.41 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: -4.31 Total: -37.87 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.67 Total: -20.59 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.03 Total: -4.10 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.10 Total: 17.29 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.63 -8.93 -36.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241719876.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.845 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds