Wall clock time and date at job start Sun Mar 29 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35137 * 125.91248 * 2 1 4 4 C 1.34976 * 108.05232 * 180.22502 * 3 2 1 5 5 C 1.41071 * 107.84939 * 359.64608 * 4 3 2 6 6 C 1.47901 * 126.07354 * 180.16485 * 5 4 3 7 7 C 1.39051 * 120.31460 * 355.97830 * 6 5 4 8 8 C 1.38381 * 119.95535 * 179.97438 * 7 6 5 9 9 F 1.35095 * 119.69336 * 179.97438 * 8 7 6 10 10 C 1.39219 * 120.61027 * 0.02562 * 8 7 6 11 11 C 1.36339 * 120.65512 * 0.02562 * 10 8 7 12 12 C 1.40797 * 120.01427 * 359.70521 * 11 10 8 13 13 C 1.40824 * 120.30058 * 180.29951 * 12 11 10 14 14 H 1.08004 * 120.00150 * 212.68430 * 13 12 11 15 15 C 1.40020 * 120.00211 * 32.67868 * 13 12 11 16 16 N 1.30821 * 119.99567 * 9.73448 * 15 13 12 17 17 Si 1.86794 * 120.00239 * 189.73107 * 15 13 12 18 18 H 1.48502 * 109.47133 * 60.00421 * 17 15 13 19 19 H 1.48498 * 109.47194 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47609 * 300.00317 * 17 15 13 21 21 N 1.31911 * 107.85882 * 0.35386 * 5 4 3 22 22 H 1.08996 * 109.47382 * 90.00091 * 1 2 3 23 23 H 1.08999 * 109.47093 * 210.00345 * 1 2 3 24 24 H 1.08998 * 109.47355 * 329.99934 * 1 2 3 25 25 H 1.08000 * 125.97266 * 359.96848 * 3 2 1 26 26 H 1.07995 * 126.07473 * 179.76921 * 4 3 2 27 27 H 1.08003 * 120.02248 * 359.97438 * 7 6 5 28 28 H 1.08004 * 119.67246 * 179.97438 * 10 8 7 29 29 H 1.08004 * 119.99583 * 179.97438 * 11 10 8 30 30 H 0.97003 * 119.99446 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2576 1.0945 0.0000 4 6 3.5423 0.6805 -0.0050 5 6 3.5421 -0.7302 0.0000 6 6 4.7374 -1.6012 0.0005 7 6 6.0097 -1.0472 -0.0885 8 6 7.1229 -1.8692 -0.0868 9 9 8.3564 -1.3253 -0.1740 10 6 6.9834 -3.2514 0.0028 11 6 5.7478 -3.8212 0.0900 12 6 4.5970 -3.0100 0.0964 13 6 3.3182 -3.5917 0.1927 14 1 2.4762 -3.1297 -0.3013 15 6 3.1382 -4.7692 0.9287 16 7 4.1069 -5.2250 1.6805 17 14 1.5150 -5.6890 0.8373 18 1 1.2576 -6.1005 -0.5662 19 1 1.5793 -6.8938 1.7029 20 1 0.4174 -4.8037 1.3027 21 7 2.2865 -1.1345 0.0001 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 1.9219 2.1210 -0.0005 26 1 4.4153 1.3163 -0.0099 27 1 6.1289 0.0239 -0.1588 28 1 7.8626 -3.8787 0.0023 29 1 5.6519 -4.8948 0.1587 30 1 3.9821 -6.0406 2.1907 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242459308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:56 Heat of formation + Delta-G solvation = 51.075686 kcal Electronic energy + Delta-G solvation = -17034.002297 eV Core-core repulsion = 14131.243837 eV Total energy + Delta-G solvation = -2902.758460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.46506 -40.24735 -37.34554 -33.63146 -32.85850 -30.08737 -29.63295 -28.83437 -26.02498 -24.87068 -21.96512 -21.27661 -19.87620 -18.94110 -17.46564 -16.51475 -15.66184 -15.23834 -14.81517 -14.51159 -14.21239 -14.12651 -13.51879 -12.95102 -12.71373 -12.40936 -12.38957 -11.87432 -11.85828 -11.59221 -11.36853 -11.15927 -10.87705 -10.52662 -9.95585 -9.77366 -9.25535 -9.15444 -8.91367 -8.00799 -7.42221 -7.08816 -6.81364 -4.37647 2.23686 2.66101 2.77814 3.04603 3.08898 3.14492 3.21162 3.91056 3.96943 4.59776 4.99120 5.26941 5.42934 5.56214 5.58152 5.67645 5.93923 6.05393 6.24741 6.32982 6.40952 6.65280 6.95953 7.02817 7.16628 7.27654 7.43802 7.65985 7.73725 7.80282 8.00374 8.15778 8.56059 8.69260 8.79563 8.86591 10.11807 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.013628 B = 0.012255 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.053877 B = 2284.180873 C = 4252.812507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.401 5.401 3 C 0.036 3.964 4 C -0.273 4.273 5 C 0.159 3.841 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.045 4.045 9 F -0.173 7.173 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.121 3.879 13 C -0.422 4.422 14 H 0.110 0.890 15 C 0.070 3.930 16 N -0.793 5.793 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.273 5.273 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.126 0.874 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 5.958 -1.705 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.183 5.183 3 C -0.108 4.108 4 C -0.303 4.303 5 C -0.004 4.004 6 C -0.139 4.139 7 C -0.106 4.106 8 C -0.065 4.065 9 F -0.152 7.152 10 C -0.146 4.146 11 C -0.145 4.145 12 C 0.117 3.883 13 C -0.451 4.451 14 H 0.127 0.873 15 C -0.148 4.148 16 N -0.418 5.418 17 Si 0.741 3.259 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.189 1.189 21 N -0.095 5.095 22 H 0.083 0.917 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.177 0.823 26 H 0.156 0.844 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.144 0.856 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.418 4.835 -1.531 8.180 hybrid contribution 0.033 0.493 0.187 0.529 sum -6.384 5.329 -1.344 8.424 Atomic orbital electron populations 1.21613 0.75818 1.03549 1.02330 1.48775 1.06066 1.04601 1.58861 1.22197 0.91475 0.92902 1.04259 1.21433 0.96302 0.94854 1.17734 1.20680 0.91541 0.91520 0.96647 1.17528 0.87856 0.91632 1.16918 1.20428 0.91156 0.97746 1.01271 1.17100 0.78538 0.91631 1.19237 1.91285 1.41652 1.86727 1.95561 1.20501 0.98176 0.92403 1.03471 1.20939 0.90621 1.00136 1.02814 1.17647 0.93778 0.89325 0.87573 1.20078 0.95788 1.04452 1.24818 0.87261 1.26066 0.98665 0.96522 0.93545 1.69783 1.33069 1.19618 1.19339 0.86226 0.81869 0.78539 0.79307 1.18734 1.20447 1.18853 1.78223 1.01116 1.03789 1.26359 0.91728 0.89803 0.90598 0.82296 0.84442 0.87574 0.88039 0.85642 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.36 11.46 59.85 0.69 2.05 16 2 N -0.40 -7.23 4.01 -68.21 -0.27 -7.50 16 3 C 0.04 0.59 11.46 -17.26 -0.20 0.39 16 4 C -0.27 -5.25 10.18 -39.67 -0.40 -5.66 16 5 C 0.16 3.70 6.89 -82.80 -0.57 3.13 16 6 C -0.14 -3.37 5.93 -104.24 -0.62 -3.99 16 7 C -0.09 -1.98 9.54 -39.23 -0.37 -2.36 16 8 C -0.05 -1.06 7.31 -39.16 -0.29 -1.35 16 9 F -0.17 -3.90 17.26 2.25 0.04 -3.86 16 10 C -0.13 -2.97 9.94 -39.90 -0.40 -3.37 16 11 C -0.13 -3.19 8.57 -39.30 -0.34 -3.52 16 12 C 0.12 3.20 5.52 -106.55 -0.59 2.61 16 13 C -0.42 -11.07 7.98 -37.94 -0.30 -11.37 16 14 H 0.11 2.88 5.58 -52.48 -0.29 2.59 16 15 C 0.07 1.74 5.25 -17.31 -0.09 1.65 16 16 N -0.79 -20.03 11.06 55.55 0.61 -19.42 16 17 Si 0.92 18.80 29.57 -169.99 -5.03 13.77 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 21 N -0.27 -6.28 9.43 33.39 0.31 -5.97 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.14 2.34 7.36 -52.49 -0.39 1.95 16 27 H 0.11 2.19 7.06 -52.48 -0.37 1.82 16 28 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.13 3.20 6.49 -52.48 -0.34 2.86 16 30 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -29.65 267.99 -6.41 -36.06 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -2.64 Total: 4.67 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -3.48 Total: -21.79 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.66 Total: -32.89 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.65 -6.41 -36.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242459308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.134 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds