Wall clock time and date at job start Sun Mar 29 2020 22:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35146 * 125.90759 * 2 1 4 4 C 1.34972 * 108.05349 * 180.21986 * 3 2 1 5 5 C 1.41088 * 107.84965 * 359.61764 * 4 3 2 6 6 C 1.47862 * 126.07484 * 180.15108 * 5 4 3 7 7 C 1.39147 * 120.25033 * 354.56794 * 6 5 4 8 8 C 1.37998 * 120.13779 * 179.97438 * 7 6 5 9 9 C 1.39190 * 120.65073 * 0.02562 * 8 7 6 10 10 F 1.35096 * 119.75356 * 180.02562 * 9 8 7 11 11 C 1.37629 * 120.50168 * 0.02562 * 9 8 7 12 12 C 1.40722 * 119.84393 * 359.70369 * 11 9 8 13 13 C 1.40872 * 120.31762 * 180.30237 * 12 11 9 14 14 H 1.08002 * 120.00277 * 146.75257 * 13 12 11 15 15 C 1.40042 * 119.99806 * 326.75208 * 13 12 11 16 16 N 1.30803 * 119.99749 * 166.84093 * 15 13 12 17 17 Si 1.86788 * 120.00054 * 346.84465 * 15 13 12 18 18 H 1.48502 * 109.47622 * 90.26300 * 17 15 13 19 19 H 1.48503 * 109.47370 * 210.26404 * 17 15 13 20 20 H 1.48501 * 109.47384 * 330.25882 * 17 15 13 21 21 N 1.31927 * 107.85474 * 0.38817 * 5 4 3 22 22 H 1.09001 * 109.46955 * 90.00340 * 1 2 3 23 23 H 1.08998 * 109.46725 * 209.99863 * 1 2 3 24 24 H 1.08994 * 109.47375 * 330.00220 * 1 2 3 25 25 H 1.08002 * 125.97246 * 359.95427 * 3 2 1 26 26 H 1.07998 * 126.07580 * 179.75655 * 4 3 2 27 27 H 1.08004 * 119.93250 * 359.95519 * 7 6 5 28 28 H 1.07997 * 119.67924 * 180.02562 * 8 7 6 29 29 H 1.08000 * 120.07739 * 179.97438 * 11 9 8 30 30 H 0.96997 * 119.99708 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2577 1.0946 0.0000 4 6 3.5424 0.6808 -0.0049 5 6 3.5423 -0.7300 0.0009 6 6 4.7374 -1.6008 0.0014 7 6 6.0083 -1.0470 -0.1178 8 6 7.1220 -1.8618 -0.1165 9 6 6.9911 -3.2423 0.0030 10 9 8.0938 -4.0229 0.0027 11 6 5.7468 -3.8184 0.1214 12 6 4.5972 -3.0068 0.1282 13 6 3.3191 -3.5854 0.2553 14 1 2.5359 -3.0556 0.7773 15 6 3.0639 -4.8475 -0.2951 16 7 1.9775 -5.4972 0.0343 17 14 4.2751 -5.6033 -1.4997 18 1 5.2749 -6.4108 -0.7555 19 1 3.5451 -6.4762 -2.4538 20 1 4.9684 -4.5238 -2.2475 21 7 2.2866 -1.1345 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.9218 2.1211 -0.0007 26 1 4.4153 1.3167 -0.0099 27 1 6.1233 0.0228 -0.2119 28 1 8.1049 -1.4240 -0.2091 29 1 5.6532 -4.8904 0.2133 30 1 1.8006 -6.3713 -0.3473 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242460460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:59 Heat of formation + Delta-G solvation = 53.042607 kcal Electronic energy + Delta-G solvation = -17113.919639 eV Core-core repulsion = 14211.246471 eV Total energy + Delta-G solvation = -2902.673168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.93901 -40.28820 -37.53901 -33.68194 -32.83825 -30.72718 -29.68828 -28.97343 -26.07476 -25.00373 -22.16285 -21.28211 -19.98603 -19.00111 -17.73844 -16.52992 -16.19377 -14.88981 -14.82468 -14.75630 -14.62707 -14.49711 -13.47868 -13.26490 -12.92341 -12.55954 -12.39222 -12.04087 -11.97170 -11.79097 -11.42041 -10.99281 -10.89979 -10.52598 -10.16065 -9.78175 -9.41386 -9.14516 -8.88595 -8.02041 -7.79471 -7.13588 -6.99073 -4.52860 2.02138 2.50800 2.67755 3.10082 3.16537 3.21170 3.29874 3.77479 3.95324 4.50101 5.01432 5.23975 5.31664 5.42561 5.47688 5.61551 5.75065 5.97387 6.08998 6.18491 6.32528 6.44813 6.58369 6.77263 7.02131 7.12202 7.34048 7.35726 7.60585 7.62737 7.76003 8.01320 8.42926 8.51418 8.64572 8.78737 9.99583 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019446 B = 0.010271 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.564145 B = 2725.572714 C = 3993.656134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.397 5.397 3 C 0.035 3.965 4 C -0.274 4.274 5 C 0.148 3.852 6 C -0.142 4.142 7 C -0.023 4.023 8 C -0.283 4.283 9 C 0.137 3.863 10 F -0.162 7.162 11 C -0.272 4.272 12 C 0.118 3.882 13 C -0.400 4.400 14 H 0.121 0.879 15 C 0.084 3.916 16 N -0.793 5.793 17 Si 0.907 3.093 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.244 1.244 21 N -0.260 5.260 22 H 0.065 0.935 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.160 0.840 26 H 0.139 0.861 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 8.504 -1.154 8.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.180 5.180 3 C -0.110 4.110 4 C -0.303 4.303 5 C -0.015 4.015 6 C -0.146 4.146 7 C -0.043 4.043 8 C -0.303 4.303 9 C 0.118 3.882 10 F -0.141 7.141 11 C -0.292 4.292 12 C 0.113 3.887 13 C -0.427 4.427 14 H 0.139 0.861 15 C -0.137 4.137 16 N -0.416 5.416 17 Si 0.733 3.267 18 H -0.193 1.193 19 H -0.216 1.216 20 H -0.167 1.167 21 N -0.081 5.081 22 H 0.083 0.917 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.178 0.822 26 H 0.156 0.844 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.098 7.317 -1.146 7.698 hybrid contribution 1.057 0.197 -0.517 1.193 sum -1.041 7.514 -1.664 7.766 Atomic orbital electron populations 1.21640 0.75609 1.03641 1.02473 1.48832 1.06246 1.04545 1.58330 1.22224 0.91486 0.92971 1.04290 1.21406 0.96327 0.94658 1.17951 1.20707 0.91677 0.91561 0.97559 1.17763 0.88849 0.91854 1.16131 1.20424 0.90946 0.97796 0.95173 1.20163 0.98419 0.91248 1.20494 1.17643 0.81697 0.88572 1.00330 1.91360 1.53214 1.75386 1.94175 1.21041 0.91191 0.99805 1.17124 1.17426 0.92590 0.90373 0.88322 1.19886 0.96840 0.99123 1.26880 0.86120 1.26273 0.95667 0.95582 0.96208 1.69643 1.24383 1.12354 1.35192 0.86402 0.79946 0.79870 0.80449 1.19266 1.21577 1.16703 1.78429 1.01006 1.03652 1.25022 0.91673 0.89546 0.90567 0.82249 0.84368 0.87239 0.87327 0.86693 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.41 11.46 59.85 0.69 2.09 16 2 N -0.40 -7.20 4.01 -68.20 -0.27 -7.47 16 3 C 0.03 0.55 11.46 -17.25 -0.20 0.36 16 4 C -0.27 -4.99 10.18 -39.66 -0.40 -5.39 16 5 C 0.15 3.34 6.87 -82.81 -0.57 2.77 16 6 C -0.14 -3.38 5.93 -104.23 -0.62 -4.00 16 7 C -0.02 -0.48 9.56 -39.33 -0.38 -0.86 16 8 C -0.28 -5.96 10.01 -39.32 -0.39 -6.36 16 9 C 0.14 3.18 7.28 -39.45 -0.29 2.89 16 10 F -0.16 -3.59 17.26 2.25 0.04 -3.55 16 11 C -0.27 -6.76 7.10 -38.87 -0.28 -7.03 16 12 C 0.12 3.04 5.09 -106.57 -0.54 2.49 16 13 C -0.40 -10.85 8.34 -37.91 -0.32 -11.16 16 14 H 0.12 3.49 6.08 -52.49 -0.32 3.17 16 15 C 0.08 2.19 5.45 -17.31 -0.09 2.10 16 16 N -0.79 -20.92 13.93 55.55 0.77 -20.14 16 17 Si 0.91 21.18 24.49 -169.99 -4.16 17.02 16 18 H -0.27 -6.09 6.56 56.52 0.37 -5.72 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.24 -5.90 6.91 56.52 0.39 -5.51 16 21 N -0.26 -6.03 9.53 33.39 0.32 -5.71 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.14 2.14 7.37 -52.49 -0.39 1.75 16 27 H 0.11 1.91 7.06 -52.48 -0.37 1.54 16 28 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 29 H 0.12 2.86 4.69 -52.49 -0.25 2.61 16 30 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 262.55 15.07 3.96 3.96 Total: -1.00 -30.02 262.55 -5.35 -35.37 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -2.61 Total: 2.62 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -3.39 Total: -22.09 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.82 Total: -33.32 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.16 Total: 17.02 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.02 -5.35 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242460460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.414 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds