Wall clock time and date at job start Sun Mar 29 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35035 * 125.93028 * 2 1 4 4 C 1.35087 * 107.97560 * 179.72689 * 3 2 1 5 5 C 1.40845 * 107.84825 * 0.43284 * 4 3 2 6 6 C 1.48441 * 126.03567 * 179.82693 * 5 4 3 7 7 C 1.39685 * 119.98452 * 4.71624 * 6 5 4 8 8 C 1.38628 * 120.35005 * 179.97438 * 7 6 5 9 9 F 1.35099 * 119.83592 * 180.02562 * 8 7 6 10 10 C 1.37939 * 120.32558 * 0.02562 * 8 7 6 11 11 C 1.40711 * 119.96282 * 0.02562 * 10 8 7 12 12 C 1.41427 * 120.17428 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99842 * 24.35281 * 12 11 10 14 14 C 1.39927 * 120.00141 * 204.35407 * 12 11 10 15 15 N 1.30831 * 119.99796 * 17.71960 * 14 12 11 16 16 Si 1.86795 * 120.00092 * 197.71493 * 14 12 11 17 17 H 1.48501 * 109.47182 * 90.00021 * 16 14 12 18 18 H 1.48498 * 109.47298 * 210.00388 * 16 14 12 19 19 H 1.48500 * 109.47287 * 329.99970 * 16 14 12 20 20 C 1.38716 * 119.98435 * 184.44034 * 6 5 4 21 21 N 1.31611 * 107.92371 * 359.56673 * 5 4 3 22 22 H 1.08996 * 109.47339 * 270.02140 * 1 2 3 23 23 H 1.09000 * 109.46951 * 30.02444 * 1 2 3 24 24 H 1.08997 * 109.47028 * 150.01765 * 1 2 3 25 25 H 1.07997 * 126.01412 * 0.02562 * 3 2 1 26 26 H 1.07996 * 126.07816 * 180.25898 * 4 3 2 27 27 H 1.07997 * 119.82183 * 0.02562 * 7 6 5 28 28 H 1.07996 * 120.01662 * 179.97438 * 10 8 7 29 29 H 0.97000 * 120.00054 * 180.02562 * 15 14 12 30 30 H 1.08008 * 120.15982 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2575 1.0934 0.0000 4 6 3.5425 0.6770 0.0061 5 6 3.5400 -0.7314 -0.0001 6 6 4.7387 -1.6069 -0.0001 7 6 6.0133 -1.0453 0.1059 8 6 7.1380 -1.8558 0.1071 9 9 8.3657 -1.3016 0.2107 10 6 7.0097 -3.2253 0.0032 11 6 5.7322 -3.8052 -0.1054 12 6 5.5954 -5.2088 -0.2116 13 1 6.3698 -5.8573 0.1708 14 6 4.4569 -5.7574 -0.8122 15 7 3.6960 -5.0134 -1.5733 16 14 4.0234 -7.5519 -0.5275 17 1 3.1452 -7.6659 0.6646 18 1 3.3135 -8.0846 -1.7180 19 1 5.2669 -8.3319 -0.3027 20 6 4.5924 -2.9827 -0.0997 21 7 2.2870 -1.1342 -0.0001 22 1 -0.3634 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.9227 2.1202 0.0004 26 1 4.4166 1.3113 0.0117 27 1 6.1231 0.0259 0.1881 28 1 7.8892 -3.8519 0.0043 29 1 2.9065 -5.3935 -1.9894 30 1 3.6076 -3.4195 -0.1768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242461021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:16 Heat of formation + Delta-G solvation = 44.377283 kcal Electronic energy + Delta-G solvation = -16706.779721 eV Core-core repulsion = 13803.730797 eV Total energy + Delta-G solvation = -2903.048925 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.71537 -40.59283 -37.30598 -33.90876 -32.88424 -30.16358 -29.79536 -28.66028 -26.04775 -25.37312 -21.98939 -21.40580 -20.11640 -19.15923 -17.50212 -16.48600 -15.51191 -15.09230 -15.04700 -14.72008 -14.52247 -14.37431 -13.69563 -13.17045 -12.99217 -12.60401 -12.48719 -12.05231 -11.98787 -11.62883 -11.18225 -11.01598 -10.60671 -10.56441 -10.22721 -9.98207 -9.57738 -9.37515 -8.93427 -8.25241 -7.47433 -7.13918 -6.82840 -4.47029 2.04213 2.55643 2.74009 2.90196 3.05075 3.08968 3.09716 3.72760 3.88767 4.59085 4.76670 5.06268 5.24124 5.31356 5.48582 5.55408 5.80048 5.92126 6.18032 6.31078 6.37769 6.60410 6.88669 6.98352 7.08606 7.14141 7.38644 7.47883 7.59551 7.81694 7.96544 8.12236 8.30775 8.50333 8.76722 8.79651 10.09949 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.008580 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.930140 B = 3262.469157 C = 4906.121100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.389 5.389 3 C 0.039 3.961 4 C -0.260 4.260 5 C 0.139 3.861 6 C 0.004 3.996 7 C -0.252 4.252 8 C 0.114 3.886 9 F -0.167 7.167 10 C -0.257 4.257 11 C 0.123 3.877 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.780 5.780 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.129 4.129 21 N -0.282 5.282 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.167 0.833 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.284 0.716 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 7.183 1.650 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.172 5.172 3 C -0.106 4.106 4 C -0.289 4.289 5 C -0.025 4.025 6 C 0.002 3.998 7 C -0.273 4.273 8 C 0.095 3.905 9 F -0.146 7.146 10 C -0.278 4.278 11 C 0.120 3.880 12 C -0.483 4.483 13 H 0.101 0.899 14 C -0.145 4.145 15 N -0.404 5.404 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.150 4.150 21 N -0.104 5.104 22 H 0.087 0.913 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.163 0.837 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.095 0.905 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.419 6.228 1.484 9.800 hybrid contribution 0.381 0.206 -0.007 0.433 sum -7.038 6.434 1.477 9.650 Atomic orbital electron populations 1.21713 0.75045 1.03983 1.02755 1.48525 1.06285 1.04077 1.58270 1.22319 0.91315 0.93079 1.03859 1.21510 0.96607 0.94649 1.16179 1.21022 0.91605 0.92520 0.97387 1.17313 0.87856 0.92043 1.02632 1.20106 0.90682 0.97888 1.18659 1.17295 0.78322 0.91692 1.03166 1.91337 1.42484 1.86511 1.94236 1.20982 0.98132 0.91636 1.17030 1.17340 0.89530 0.93574 0.87574 1.19595 1.03722 0.91578 1.33385 0.89856 1.25967 0.95151 1.00729 0.92646 1.69818 1.12429 1.38184 1.19920 0.86246 0.79649 0.81664 0.78851 1.19121 1.20215 1.18451 1.21619 1.00122 0.90518 1.02710 1.77743 1.01302 1.06049 1.25286 0.91323 0.90076 0.89528 0.81533 0.83737 0.87666 0.87611 0.90490 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.16 11.46 59.85 0.69 1.84 16 2 N -0.39 -6.41 4.01 -68.20 -0.27 -6.68 16 3 C 0.04 0.58 11.47 -17.26 -0.20 0.38 16 4 C -0.26 -4.67 10.17 -39.72 -0.40 -5.08 16 5 C 0.14 3.08 6.98 -82.77 -0.58 2.50 16 6 C 0.00 0.10 5.87 -104.98 -0.62 -0.52 16 7 C -0.25 -5.87 9.56 -38.90 -0.37 -6.24 16 8 C 0.11 2.75 7.28 -39.55 -0.29 2.46 16 9 F -0.17 -3.76 17.26 2.25 0.04 -3.72 16 10 C -0.26 -6.47 9.76 -38.76 -0.38 -6.85 16 11 C 0.12 3.28 5.57 -106.87 -0.60 2.69 16 12 C -0.45 -11.88 9.05 -37.74 -0.34 -12.23 16 13 H 0.08 2.08 7.91 -52.49 -0.41 1.66 16 14 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 15 N -0.78 -20.13 10.96 55.55 0.61 -19.52 16 16 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 C -0.13 -3.41 8.32 -38.53 -0.32 -3.73 16 21 N -0.28 -6.12 12.23 33.43 0.41 -5.71 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.17 1.65 8.06 -52.49 -0.42 1.22 16 26 H 0.14 2.30 7.34 -52.49 -0.39 1.92 16 27 H 0.11 2.18 7.03 -52.49 -0.37 1.81 16 28 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 29 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 30 H 0.13 3.72 5.95 -52.48 -0.31 3.41 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -30.16 273.07 -6.36 -36.51 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -2.73 Total: 4.58 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.49 Total: -23.01 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.74 Total: -31.92 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.16 -6.36 -36.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242461021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.891 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds