Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35035 * 125.93028 * 2 1 4 4 C 1.35087 * 107.97560 * 179.72689 * 3 2 1 5 5 C 1.40845 * 107.84825 * 0.43284 * 4 3 2 6 6 C 1.48441 * 126.03567 * 179.82693 * 5 4 3 7 7 C 1.39685 * 119.98452 * 4.71624 * 6 5 4 8 8 C 1.38628 * 120.35005 * 179.97438 * 7 6 5 9 9 F 1.35099 * 119.83592 * 180.02562 * 8 7 6 10 10 C 1.37939 * 120.32558 * 0.02562 * 8 7 6 11 11 C 1.40711 * 119.96282 * 0.02562 * 10 8 7 12 12 C 1.41427 * 120.17428 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99842 * 24.35281 * 12 11 10 14 14 C 1.39927 * 120.00141 * 204.35407 * 12 11 10 15 15 N 1.30831 * 119.99796 * 17.71960 * 14 12 11 16 16 Si 1.86795 * 120.00092 * 197.71493 * 14 12 11 17 17 H 1.48501 * 109.47182 * 90.00021 * 16 14 12 18 18 H 1.48498 * 109.47298 * 210.00388 * 16 14 12 19 19 H 1.48500 * 109.47287 * 329.99970 * 16 14 12 20 20 C 1.38716 * 119.98435 * 184.44034 * 6 5 4 21 21 N 1.31611 * 107.92371 * 359.56673 * 5 4 3 22 22 H 1.08996 * 109.47339 * 270.02140 * 1 2 3 23 23 H 1.09000 * 109.46951 * 30.02444 * 1 2 3 24 24 H 1.08997 * 109.47028 * 150.01765 * 1 2 3 25 25 H 1.07997 * 126.01412 * 0.02562 * 3 2 1 26 26 H 1.07996 * 126.07816 * 180.25898 * 4 3 2 27 27 H 1.07997 * 119.82183 * 0.02562 * 7 6 5 28 28 H 1.07996 * 120.01662 * 179.97438 * 10 8 7 29 29 H 0.97000 * 120.00054 * 180.02562 * 15 14 12 30 30 H 1.08008 * 120.15982 * 359.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2575 1.0934 0.0000 4 6 3.5425 0.6770 0.0061 5 6 3.5400 -0.7314 -0.0001 6 6 4.7387 -1.6069 -0.0001 7 6 6.0133 -1.0453 0.1059 8 6 7.1380 -1.8558 0.1071 9 9 8.3657 -1.3016 0.2107 10 6 7.0097 -3.2253 0.0032 11 6 5.7322 -3.8052 -0.1054 12 6 5.5954 -5.2088 -0.2116 13 1 6.3698 -5.8573 0.1708 14 6 4.4569 -5.7574 -0.8122 15 7 3.6960 -5.0134 -1.5733 16 14 4.0234 -7.5519 -0.5275 17 1 3.1452 -7.6659 0.6646 18 1 3.3135 -8.0846 -1.7180 19 1 5.2669 -8.3319 -0.3027 20 6 4.5924 -2.9827 -0.0997 21 7 2.2870 -1.1342 -0.0001 22 1 -0.3634 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.9227 2.1202 0.0004 26 1 4.4166 1.3113 0.0117 27 1 6.1231 0.0259 0.1881 28 1 7.8892 -3.8519 0.0043 29 1 2.9065 -5.3935 -1.9894 30 1 3.6076 -3.4195 -0.1768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242461021.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = 26.906415 kcal Electronic energy + Delta-G solvation = -16707.537315 eV Core-core repulsion = 13803.730797 eV Total energy + Delta-G solvation = -2903.806518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.59153 -41.95748 -39.18391 -35.71935 -34.32100 -31.85552 -31.32374 -30.40182 -27.53984 -27.06459 -23.67407 -23.16728 -21.55105 -20.81597 -19.24908 -17.91220 -17.28651 -16.83514 -16.61513 -16.36900 -16.28799 -16.19145 -15.10634 -14.69075 -14.46569 -14.03641 -13.79234 -13.65001 -13.44968 -13.13586 -12.86869 -12.81406 -12.43167 -12.26858 -11.98506 -11.64777 -11.31660 -11.15064 -10.54077 -9.65875 -9.36539 -8.93578 -8.69100 -6.46359 0.33025 0.83017 1.19286 1.37644 1.46683 1.52320 1.75641 2.06452 2.18589 2.73651 3.49169 3.59784 3.88403 3.98170 4.22924 4.43158 4.46893 4.68029 4.69305 4.72873 4.89677 4.91320 4.98022 5.16182 5.22669 5.45187 5.61223 5.75068 5.93347 6.00327 6.19200 6.29021 6.52532 6.80535 6.82278 6.88689 8.25080 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.008580 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.930140 B = 3262.469157 C = 4906.121100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.383 5.383 3 C 0.068 3.932 4 C -0.283 4.283 5 C 0.100 3.900 6 C 0.004 3.996 7 C -0.248 4.248 8 C 0.113 3.887 9 F -0.157 7.157 10 C -0.274 4.274 11 C 0.098 3.902 12 C -0.487 4.487 13 H 0.086 0.914 14 C 0.034 3.966 15 N -0.812 5.812 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.266 1.266 19 H -0.253 1.253 20 C -0.158 4.158 21 N -0.331 5.331 22 H 0.087 0.913 23 H 0.126 0.874 24 H 0.078 0.922 25 H 0.228 0.772 26 H 0.161 0.839 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.291 0.709 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 8.811 1.829 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.078 4.078 4 C -0.311 4.311 5 C -0.063 4.063 6 C 0.002 3.998 7 C -0.269 4.269 8 C 0.094 3.906 9 F -0.135 7.135 10 C -0.295 4.295 11 C 0.096 3.904 12 C -0.515 4.515 13 H 0.104 0.896 14 C -0.183 4.183 15 N -0.437 5.437 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.191 1.191 19 H -0.176 1.176 20 C -0.179 4.179 21 N -0.155 5.155 22 H 0.105 0.895 23 H 0.145 0.855 24 H 0.096 0.904 25 H 0.245 0.755 26 H 0.179 0.821 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.841 7.863 1.663 11.948 hybrid contribution 0.710 -0.113 -0.063 0.721 sum -8.131 7.750 1.600 11.346 Atomic orbital electron populations 1.22202 0.71886 1.05861 1.04603 1.48975 1.08049 1.03324 1.56230 1.23147 0.89829 0.94866 0.99930 1.21786 0.98961 0.92781 1.17618 1.20969 0.91076 0.94238 1.00017 1.17644 0.89743 0.91847 1.00572 1.20382 0.89921 0.99212 1.17393 1.17363 0.79014 0.91476 1.02783 1.91352 1.41844 1.86242 1.94108 1.21111 0.97935 0.92522 1.17926 1.17671 0.90243 0.94374 0.88136 1.19881 1.05119 0.91761 1.34785 0.89596 1.26876 0.94346 1.05421 0.91608 1.69890 1.12913 1.40342 1.20527 0.85125 0.79547 0.75664 0.78962 1.18752 1.19054 1.17622 1.21504 0.99144 0.91781 1.05502 1.77615 1.02014 1.09297 1.26599 0.89453 0.85543 0.90360 0.75547 0.82135 0.84845 0.87002 0.89870 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.72 11.46 127.77 1.46 3.18 16 2 N -0.38 -11.66 4.01 -369.68 -1.48 -13.14 16 3 C 0.07 1.75 11.47 83.47 0.96 2.70 16 4 C -0.28 -9.55 10.17 22.18 0.23 -9.33 16 5 C 0.10 4.44 6.98 42.54 0.30 4.74 16 6 C 0.00 0.21 5.87 -20.09 -0.12 0.10 16 7 C -0.25 -11.58 9.56 22.71 0.22 -11.36 16 8 C 0.11 5.47 7.28 22.29 0.16 5.63 16 9 F -0.16 -6.96 17.26 44.97 0.78 -6.19 16 10 C -0.27 -14.28 9.76 22.80 0.22 -14.06 16 11 C 0.10 5.52 5.57 -21.32 -0.12 5.40 16 12 C -0.49 -26.57 9.05 23.46 0.21 -26.36 16 13 H 0.09 4.45 7.91 -2.91 -0.02 4.43 16 14 C 0.03 1.74 5.14 85.25 0.44 2.18 16 15 N -0.81 -43.59 10.96 21.82 0.24 -43.35 16 16 Si 0.99 38.41 29.59 68.60 2.03 40.44 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 19 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 20 C -0.16 -8.83 8.32 22.95 0.19 -8.64 16 21 N -0.33 -14.46 12.23 -48.15 -0.59 -15.05 16 22 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.23 2.92 8.06 -2.91 -0.02 2.89 16 26 H 0.16 4.69 7.34 -2.91 -0.02 4.67 16 27 H 0.13 5.36 7.03 -2.91 -0.02 5.33 16 28 H 0.11 5.50 8.06 -2.91 -0.02 5.48 16 29 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 30 H 0.11 6.72 5.95 -2.91 -0.02 6.71 16 Total: -1.00 -69.60 273.07 6.29 -63.31 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 1.16 Total: 19.80 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 4.15 Total: -45.82 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.83 Total: -71.55 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.78 Total: -6.19 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -69.60 6.29 -63.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242461021.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.215 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds