Wall clock time and date at job start Sun Mar 29 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35091 * 126.45627 * 2 1 4 4 N 1.30583 * 108.98597 * 180.27234 * 3 2 1 5 5 C 1.33802 * 109.54631 * 359.72965 * 4 3 2 6 6 C 1.36077 * 107.88396 * 359.97438 * 5 4 3 7 7 C 1.47902 * 126.75249 * 180.02562 * 6 5 4 8 8 C 1.38863 * 120.03719 * 131.73685 * 7 6 5 9 9 C 1.40497 * 119.64007 * 180.27114 * 8 7 6 10 10 C 1.41339 * 120.14388 * 179.71873 * 9 8 7 11 11 H 1.08005 * 120.00097 * 154.84897 * 10 9 8 12 12 C 1.39874 * 120.00559 * 334.84986 * 10 9 8 13 13 N 1.30871 * 119.99626 * 343.09471 * 12 10 9 14 14 Si 1.86801 * 120.00425 * 163.09182 * 12 10 9 15 15 H 1.48498 * 109.47219 * 90.00219 * 14 12 10 16 16 H 1.48503 * 109.46983 * 210.00481 * 14 12 10 17 17 H 1.48505 * 109.46978 * 329.99880 * 14 12 10 18 18 C 1.40885 * 119.70700 * 359.74415 * 9 8 7 19 19 C 1.37592 * 120.06214 * 0.02562 * 18 9 8 20 20 C 1.38700 * 120.36795 * 359.97438 * 19 18 9 21 21 F 1.35099 * 119.85161 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.46720 * 264.78505 * 1 2 3 23 23 H 1.09000 * 109.47129 * 24.78094 * 1 2 3 24 24 H 1.08997 * 109.46920 * 144.78599 * 1 2 3 25 25 H 1.08006 * 125.50296 * 359.97438 * 3 2 1 26 26 H 1.07991 * 126.05999 * 180.02562 * 5 4 3 27 27 H 1.07994 * 120.17873 * 359.97438 * 8 7 6 28 28 H 0.97009 * 119.99778 * 179.97438 * 13 12 10 29 29 H 1.08004 * 119.96444 * 180.02562 * 18 9 8 30 30 H 1.07993 * 119.81305 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.0866 0.0000 4 7 3.5134 0.6945 -0.0059 5 6 3.5618 -0.6426 -0.0039 6 6 2.2828 -1.1071 0.0042 7 6 1.8556 -2.5231 0.0095 8 6 0.8936 -2.9554 0.9128 9 6 0.4980 -4.3036 0.9145 10 6 -0.4759 -4.7564 1.8332 11 1 -1.0714 -5.6276 1.6033 12 6 -0.6685 -4.0764 3.0402 13 7 0.2435 -3.2448 3.4755 14 14 -2.2275 -4.3550 4.0309 15 1 -2.0158 -5.4750 4.9826 16 1 -2.5617 -3.1204 4.7856 17 1 -3.3446 -4.6908 3.1118 18 6 1.0769 -5.2021 -0.0034 19 6 2.0256 -4.7596 -0.8963 20 6 2.4181 -3.4293 -0.9004 21 9 3.3509 -3.0062 -1.7813 22 1 -0.3633 -0.0934 1.0234 23 1 -0.3633 0.9330 -0.4307 24 1 -0.3633 -0.8396 -0.5926 25 1 1.9333 2.1135 -0.0004 26 1 4.4573 -1.2462 -0.0072 27 1 0.4554 -2.2602 1.6135 28 1 0.1097 -2.7729 4.3124 29 1 0.7756 -6.2393 -0.0061 30 1 2.4669 -5.4519 -1.5978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243071621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:28 Heat of formation + Delta-G solvation = 26.158200 kcal Electronic energy + Delta-G solvation = -17261.712143 eV Core-core repulsion = 14357.873180 eV Total energy + Delta-G solvation = -2903.838963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.53606 -41.39953 -37.42960 -33.81181 -33.53199 -31.26004 -29.51494 -27.54559 -26.56166 -25.18713 -22.06557 -21.44102 -20.48820 -19.42878 -17.52999 -16.52583 -16.10398 -15.53191 -15.15610 -14.60454 -14.32385 -14.26562 -13.58099 -13.17660 -12.89761 -12.55417 -12.47362 -12.28291 -12.04541 -11.98941 -11.39885 -11.21328 -11.02700 -10.52466 -10.16931 -9.85617 -9.52880 -9.30440 -9.09572 -8.34865 -7.55104 -7.22013 -6.95924 -4.56318 2.05888 2.57255 2.84664 2.95040 2.96319 3.02285 3.30903 3.71711 3.76620 4.34513 5.04384 5.09570 5.27146 5.36154 5.47715 5.67348 5.74663 5.88554 5.97027 6.26901 6.51578 6.66496 6.74876 6.94274 7.00544 7.17455 7.28195 7.50401 7.60484 7.68566 7.77835 7.96990 8.32367 8.55369 8.62032 8.65528 9.96962 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.008663 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.824961 B = 3231.361385 C = 4142.026876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.454 5.454 3 C 0.160 3.840 4 N -0.497 5.497 5 C -0.021 4.021 6 C 0.051 3.949 7 C -0.043 4.043 8 C -0.124 4.124 9 C 0.100 3.900 10 C -0.455 4.455 11 H 0.082 0.918 12 C 0.074 3.926 13 N -0.789 5.789 14 Si 0.909 3.091 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.259 1.259 18 C -0.197 4.197 19 C -0.117 4.117 20 C -0.020 4.020 21 F -0.164 7.164 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.199 0.801 26 H 0.166 0.834 27 H 0.129 0.871 28 H 0.284 0.716 29 H 0.105 0.895 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 3.889 -2.550 5.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.137 5.137 3 C -0.121 4.121 4 N -0.216 5.216 5 C -0.170 4.170 6 C -0.063 4.063 7 C -0.045 4.045 8 C -0.144 4.144 9 C 0.097 3.903 10 C -0.484 4.484 11 H 0.101 0.899 12 C -0.144 4.144 13 N -0.414 5.414 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.183 1.183 18 C -0.217 4.217 19 C -0.136 4.136 20 C -0.041 4.041 21 F -0.143 7.143 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.216 0.784 26 H 0.183 0.817 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.699 4.617 -2.374 5.851 hybrid contribution -1.207 -0.545 0.521 1.424 sum -3.906 4.071 -1.853 5.939 Atomic orbital electron populations 1.22015 0.76837 1.03968 1.03936 1.45350 1.07434 1.06563 1.54350 1.24695 0.85899 0.93026 1.08485 1.70034 1.19229 1.12473 1.19824 1.22190 0.95622 0.90391 1.08747 1.19827 0.90469 0.87381 1.08620 1.17690 1.00663 0.87617 0.98536 1.21360 0.98365 0.96523 0.98175 1.17561 0.90943 0.90601 0.91147 1.19558 1.16801 1.11661 1.00425 0.89940 1.25952 0.97093 0.93515 0.97887 1.69825 1.31261 1.20950 1.19384 0.86292 0.81844 0.78904 0.79697 1.19256 1.20006 1.18304 1.20948 1.00931 0.98525 1.01249 1.20462 0.99760 0.92977 1.00444 1.17196 0.97913 0.93217 0.95741 1.91313 1.64331 1.90888 1.67809 0.90434 0.89976 0.89432 0.78431 0.81709 0.85380 0.90530 0.87695 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.16 59.85 0.61 1.68 16 2 N -0.45 -8.22 3.17 -121.77 -0.39 -8.61 16 3 C 0.16 2.71 12.55 -90.26 -1.13 1.58 16 4 N -0.50 -10.00 11.22 -14.38 -0.16 -10.16 16 5 C -0.02 -0.46 11.17 -17.47 -0.20 -0.65 16 6 C 0.05 1.11 6.21 -82.08 -0.51 0.60 16 7 C -0.04 -0.99 5.53 -104.97 -0.58 -1.57 16 8 C -0.12 -2.98 7.73 -38.50 -0.30 -3.28 16 9 C 0.10 2.45 5.57 -106.87 -0.59 1.86 16 10 C -0.46 -11.02 9.05 -37.79 -0.34 -11.36 16 11 H 0.08 1.90 7.90 -52.48 -0.41 1.49 16 12 C 0.07 1.71 5.15 -17.35 -0.09 1.62 16 13 N -0.79 -19.10 10.94 55.54 0.61 -18.49 16 14 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 15 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 16 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 C -0.20 -4.45 9.78 -38.82 -0.38 -4.83 16 19 C -0.12 -2.55 9.99 -39.65 -0.40 -2.95 16 20 C -0.02 -0.46 7.27 -38.67 -0.28 -0.74 16 21 F -0.16 -3.70 16.30 2.25 0.04 -3.66 16 22 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 23 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 24 H 0.09 1.32 8.00 -51.93 -0.42 0.91 16 25 H 0.20 2.39 8.06 -52.48 -0.42 1.96 16 26 H 0.17 3.39 8.06 -52.49 -0.42 2.96 16 27 H 0.13 3.15 5.85 -52.49 -0.31 2.84 16 28 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 29 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 271.21 15.07 4.09 4.09 Total: -1.00 -28.13 271.21 -7.84 -35.97 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.81 Total: 6.74 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -4.19 Total: -18.05 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.06 Total: -37.26 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.13 -7.84 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243071621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.131 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds