Wall clock time and date at job start Sun Mar 29 2020 22:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35091 * 126.45627 * 2 1 4 4 N 1.30583 * 108.98597 * 180.27234 * 3 2 1 5 5 C 1.33802 * 109.54631 * 359.72965 * 4 3 2 6 6 C 1.36077 * 107.88396 * 359.97438 * 5 4 3 7 7 C 1.47902 * 126.75249 * 180.02562 * 6 5 4 8 8 C 1.38863 * 120.03719 * 131.73685 * 7 6 5 9 9 C 1.40497 * 119.64007 * 180.27114 * 8 7 6 10 10 C 1.41339 * 120.14388 * 179.71873 * 9 8 7 11 11 H 1.08005 * 120.00097 * 154.84897 * 10 9 8 12 12 C 1.39874 * 120.00559 * 334.84986 * 10 9 8 13 13 N 1.30871 * 119.99626 * 343.09471 * 12 10 9 14 14 Si 1.86801 * 120.00425 * 163.09182 * 12 10 9 15 15 H 1.48498 * 109.47219 * 90.00219 * 14 12 10 16 16 H 1.48503 * 109.46983 * 210.00481 * 14 12 10 17 17 H 1.48505 * 109.46978 * 329.99880 * 14 12 10 18 18 C 1.40885 * 119.70700 * 359.74415 * 9 8 7 19 19 C 1.37592 * 120.06214 * 0.02562 * 18 9 8 20 20 C 1.38700 * 120.36795 * 359.97438 * 19 18 9 21 21 F 1.35099 * 119.85161 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.46720 * 264.78505 * 1 2 3 23 23 H 1.09000 * 109.47129 * 24.78094 * 1 2 3 24 24 H 1.08997 * 109.46920 * 144.78599 * 1 2 3 25 25 H 1.08006 * 125.50296 * 359.97438 * 3 2 1 26 26 H 1.07991 * 126.05999 * 180.02562 * 5 4 3 27 27 H 1.07994 * 120.17873 * 359.97438 * 8 7 6 28 28 H 0.97009 * 119.99778 * 179.97438 * 13 12 10 29 29 H 1.08004 * 119.96444 * 180.02562 * 18 9 8 30 30 H 1.07993 * 119.81305 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.0866 0.0000 4 7 3.5134 0.6945 -0.0059 5 6 3.5618 -0.6426 -0.0039 6 6 2.2828 -1.1071 0.0042 7 6 1.8556 -2.5231 0.0095 8 6 0.8936 -2.9554 0.9128 9 6 0.4980 -4.3036 0.9145 10 6 -0.4759 -4.7564 1.8332 11 1 -1.0714 -5.6276 1.6033 12 6 -0.6685 -4.0764 3.0402 13 7 0.2435 -3.2448 3.4755 14 14 -2.2275 -4.3550 4.0309 15 1 -2.0158 -5.4750 4.9826 16 1 -2.5617 -3.1204 4.7856 17 1 -3.3446 -4.6908 3.1118 18 6 1.0769 -5.2021 -0.0034 19 6 2.0256 -4.7596 -0.8963 20 6 2.4181 -3.4293 -0.9004 21 9 3.3509 -3.0062 -1.7813 22 1 -0.3633 -0.0934 1.0234 23 1 -0.3633 0.9330 -0.4307 24 1 -0.3633 -0.8396 -0.5926 25 1 1.9333 2.1135 -0.0004 26 1 4.4573 -1.2462 -0.0072 27 1 0.4554 -2.2602 1.6135 28 1 0.1097 -2.7729 4.3124 29 1 0.7756 -6.2393 -0.0061 30 1 2.4669 -5.4519 -1.5978 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243071621.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:28 Heat of formation + Delta-G solvation = 12.773289 kcal Electronic energy + Delta-G solvation = -17262.292556 eV Core-core repulsion = 14357.873180 eV Total energy + Delta-G solvation = -2904.419377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.32483 -42.87099 -39.19121 -35.56966 -34.93109 -32.92939 -31.30649 -29.14858 -27.83948 -26.97975 -23.73521 -23.14739 -22.01790 -21.01353 -19.22118 -18.14980 -17.76144 -17.19732 -16.66610 -16.26688 -16.03843 -15.84059 -15.06683 -14.77804 -14.48541 -14.09190 -13.90328 -13.79696 -13.66755 -13.43548 -13.12392 -12.80638 -12.61719 -12.25227 -11.82132 -11.56936 -11.15099 -10.96920 -10.54507 -9.99532 -9.35344 -8.89455 -8.69430 -6.40289 0.37489 0.82216 1.29239 1.40554 1.47339 1.55051 1.93882 2.17608 2.18698 2.60291 3.53348 3.69881 3.86524 3.88378 3.99831 4.26770 4.36223 4.37949 4.63025 4.73448 4.79834 4.95872 5.05658 5.20220 5.34391 5.43423 5.64349 5.75942 5.81142 5.96926 6.18274 6.34654 6.52640 6.82428 6.84318 7.06876 8.24906 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.022080 B = 0.008663 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.824961 B = 3231.361385 C = 4142.026876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.456 5.456 3 C 0.185 3.815 4 N -0.526 5.526 5 C -0.034 4.034 6 C 0.018 3.982 7 C -0.042 4.042 8 C -0.137 4.137 9 C 0.075 3.925 10 C -0.482 4.482 11 H 0.087 0.913 12 C 0.038 3.962 13 N -0.821 5.821 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.254 1.254 18 C -0.206 4.206 19 C -0.113 4.113 20 C -0.039 4.039 21 F -0.164 7.164 22 H 0.074 0.926 23 H 0.131 0.869 24 H 0.072 0.928 25 H 0.253 0.747 26 H 0.159 0.841 27 H 0.118 0.882 28 H 0.290 0.710 29 H 0.121 0.879 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 4.839 -2.448 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.137 5.137 3 C -0.097 4.097 4 N -0.245 5.245 5 C -0.182 4.182 6 C -0.097 4.097 7 C -0.045 4.045 8 C -0.157 4.157 9 C 0.073 3.927 10 C -0.511 4.511 11 H 0.105 0.895 12 C -0.178 4.178 13 N -0.447 5.447 14 Si 0.801 3.199 15 H -0.189 1.189 16 H -0.192 1.192 17 H -0.177 1.177 18 C -0.226 4.226 19 C -0.132 4.132 20 C -0.059 4.059 21 F -0.144 7.144 22 H 0.093 0.907 23 H 0.150 0.850 24 H 0.091 0.909 25 H 0.269 0.731 26 H 0.177 0.823 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.139 0.861 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.034 5.553 -2.289 7.235 hybrid contribution -0.744 -0.769 0.452 1.162 sum -4.778 4.784 -1.836 7.006 Atomic orbital electron populations 1.22260 0.74663 1.06029 1.04007 1.45574 1.08787 1.05754 1.53627 1.25771 0.84848 0.94625 1.04410 1.70038 1.21184 1.11589 1.21691 1.22243 0.95600 0.91336 1.09064 1.19759 0.91307 0.87714 1.10968 1.17847 0.99909 0.88836 0.97868 1.21244 0.99436 0.96358 0.98689 1.17942 0.91569 0.91252 0.91980 1.19846 1.17454 1.12546 1.01241 0.89487 1.26766 0.99784 0.92753 0.98481 1.69890 1.32972 1.21720 1.20070 0.85212 0.77705 0.78929 0.78036 1.18941 1.19250 1.17734 1.21169 1.01109 0.99167 1.01128 1.20736 0.99069 0.93010 1.00380 1.17451 0.98386 0.93922 0.96150 1.91302 1.64334 1.90967 1.67755 0.90699 0.85033 0.90911 0.73127 0.82348 0.86416 0.89950 0.86066 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.16 127.77 1.30 3.20 16 2 N -0.46 -15.82 3.17 -539.18 -1.71 -17.53 16 3 C 0.18 5.77 12.55 180.22 2.26 8.04 16 4 N -0.53 -20.55 11.22 -199.41 -2.24 -22.79 16 5 C -0.03 -1.49 11.17 83.89 0.94 -0.55 16 6 C 0.02 0.76 6.21 40.29 0.25 1.01 16 7 C -0.04 -1.99 5.53 -20.09 -0.11 -2.10 16 8 C -0.14 -6.74 7.73 22.97 0.18 -6.57 16 9 C 0.08 3.74 5.57 -21.32 -0.12 3.62 16 10 C -0.48 -23.52 9.05 23.43 0.21 -23.31 16 11 H 0.09 4.01 7.90 -2.91 -0.02 3.99 16 12 C 0.04 1.75 5.15 85.23 0.44 2.19 16 13 N -0.82 -40.10 10.94 21.81 0.24 -39.86 16 14 Si 0.98 34.65 29.59 68.60 2.03 36.68 16 15 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 16 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 17 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 18 C -0.21 -9.34 9.78 22.77 0.22 -9.12 16 19 C -0.11 -4.89 9.99 22.23 0.22 -4.67 16 20 C -0.04 -1.78 7.27 22.86 0.17 -1.62 16 21 F -0.16 -7.45 16.30 44.97 0.73 -6.71 16 22 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 23 H 0.13 2.15 8.13 -2.39 -0.02 2.13 16 24 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 25 H 0.25 4.76 8.06 -2.91 -0.02 4.73 16 26 H 0.16 6.75 8.06 -2.92 -0.02 6.72 16 27 H 0.12 5.95 5.85 -2.91 -0.02 5.93 16 28 H 0.29 12.89 8.30 -92.70 -0.77 12.12 16 29 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -61.45 271.21 6.17 -55.28 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 1.16 Total: 24.80 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.96 Total: -29.87 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.71 Total: -80.18 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.73 Total: -6.71 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.68 kcal Total: -61.45 6.17 -55.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243071621.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.058 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds