Wall clock time and date at job start Sun Mar 29 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35058 * 126.45617 * 2 1 4 4 N 1.30592 * 108.98873 * 179.85914 * 3 2 1 5 5 C 1.33796 * 109.54235 * 0.41374 * 4 3 2 6 6 C 1.36058 * 107.88485 * 359.74308 * 5 4 3 7 7 C 1.47928 * 126.75286 * 180.02562 * 6 5 4 8 8 C 1.39898 * 120.00966 * 340.62887 * 7 6 5 9 9 C 1.38563 * 120.32788 * 179.97438 * 8 7 6 10 10 F 1.35105 * 119.82097 * 179.97438 * 9 8 7 11 11 C 1.37966 * 120.35196 * 0.02562 * 9 8 7 12 12 C 1.40740 * 120.00498 * 0.02562 * 11 9 8 13 13 C 1.41435 * 120.16066 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99948 * 150.84496 * 13 12 11 15 15 C 1.39912 * 120.00277 * 330.84340 * 13 12 11 16 16 N 1.30841 * 120.00074 * 349.88750 * 15 13 12 17 17 Si 1.86800 * 120.00372 * 169.88360 * 15 13 12 18 18 H 1.48497 * 109.47065 * 89.99703 * 17 15 13 19 19 H 1.48501 * 109.47488 * 210.00071 * 17 15 13 20 20 H 1.48505 * 109.47080 * 330.00265 * 17 15 13 21 21 C 1.38943 * 120.00588 * 160.35328 * 7 6 5 22 22 H 1.09000 * 109.46957 * 263.67558 * 1 2 3 23 23 H 1.09002 * 109.46846 * 143.67324 * 1 2 3 24 24 H 1.09004 * 109.46879 * 23.67271 * 1 2 3 25 25 H 1.08003 * 125.50245 * 0.02562 * 3 2 1 26 26 H 1.07996 * 126.05766 * 179.72271 * 5 4 3 27 27 H 1.08002 * 119.83392 * 359.95326 * 8 7 6 28 28 H 1.08004 * 119.99557 * 179.97438 * 11 9 8 29 29 H 0.96998 * 119.99917 * 179.97438 * 16 15 13 30 30 H 1.08000 * 120.16918 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2675 1.0863 0.0000 4 7 3.5132 0.6943 0.0030 5 6 3.5617 -0.6428 -0.0040 6 6 2.2828 -1.1072 -0.0060 7 6 1.8555 -2.5234 -0.0128 8 6 2.7474 -3.5215 -0.4196 9 6 2.3542 -4.8501 -0.4281 10 9 3.2237 -5.8056 -0.8234 11 6 1.0792 -5.2024 -0.0359 12 6 0.1698 -4.2099 0.3750 13 6 -1.1382 -4.5673 0.7772 14 1 -1.6645 -3.9631 1.5013 15 6 -1.7504 -5.7034 0.2369 16 7 -1.2027 -6.3216 -0.7779 17 14 -3.3497 -6.3378 0.9643 18 1 -4.4968 -5.6959 0.2733 19 1 -3.4252 -7.8101 0.7856 20 1 -3.3987 -6.0117 2.4123 21 6 0.5700 -2.8632 0.3903 22 1 -0.3633 -0.1132 1.0214 23 1 -0.3633 -0.8280 -0.6088 24 1 -0.3633 0.9412 -0.4126 25 1 1.9330 2.1132 0.0004 26 1 4.4572 -1.2464 -0.0078 27 1 3.7472 -3.2550 -0.7290 28 1 0.7787 -6.2397 -0.0451 29 1 -1.6269 -7.1095 -1.1522 30 1 -0.1195 -2.0956 0.7096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243073112.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:29 Heat of formation + Delta-G solvation = 26.693673 kcal Electronic energy + Delta-G solvation = -16921.879910 eV Core-core repulsion = 14018.064166 eV Total energy + Delta-G solvation = -2903.815744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.73917 -41.61534 -37.45340 -34.01400 -33.69447 -30.95635 -29.63026 -27.54518 -26.68056 -25.58288 -22.19093 -21.54284 -20.19550 -19.71802 -17.67543 -16.53073 -15.74055 -15.41922 -15.17633 -14.94763 -14.63393 -14.39778 -13.64170 -13.36290 -12.98151 -12.78650 -12.70627 -12.49084 -12.05650 -11.75351 -11.26907 -11.18280 -10.86169 -10.56242 -10.13825 -10.00510 -9.55202 -9.47560 -9.24469 -8.48230 -7.59929 -7.08513 -6.88684 -4.65756 1.85460 2.51898 2.89975 2.97174 3.00616 3.04712 3.15624 3.62301 3.78945 4.42843 4.93799 4.96955 5.09495 5.31164 5.40824 5.62428 5.67000 5.77246 6.05543 6.17843 6.36387 6.47738 6.70386 6.85418 7.02084 7.09537 7.28709 7.48574 7.53330 7.58302 7.72778 8.00316 8.34455 8.40160 8.62211 8.63836 10.02091 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.007180 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.037052 B = 3898.666368 C = 4924.532901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.456 5.456 3 C 0.162 3.838 4 N -0.497 5.497 5 C -0.029 4.029 6 C 0.047 3.953 7 C 0.018 3.982 8 C -0.246 4.246 9 C 0.108 3.892 10 F -0.163 7.163 11 C -0.187 4.187 12 C 0.129 3.871 13 C -0.458 4.458 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.794 5.794 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.224 4.224 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.200 0.800 26 H 0.168 0.832 27 H 0.108 0.892 28 H 0.134 0.866 29 H 0.284 0.716 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 6.664 1.113 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.138 5.138 3 C -0.118 4.118 4 N -0.215 5.215 5 C -0.177 4.177 6 C -0.067 4.067 7 C 0.016 3.984 8 C -0.267 4.267 9 C 0.088 3.912 10 F -0.142 7.142 11 C -0.207 4.207 12 C 0.127 3.873 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.145 4.145 16 N -0.419 5.419 17 Si 0.738 3.262 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.184 1.184 21 C -0.244 4.244 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.217 0.783 26 H 0.186 0.814 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.095 0.905 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.745 6.983 0.943 7.086 hybrid contribution -1.369 -0.990 0.101 1.692 sum -2.114 5.994 1.044 6.441 Atomic orbital electron populations 1.22265 0.76649 1.04571 1.03983 1.45318 1.07603 1.06584 1.54301 1.24751 0.85825 0.93123 1.08133 1.70058 1.19265 1.12487 1.19723 1.22237 0.95686 0.90531 1.09237 1.20021 0.90374 0.87621 1.08690 1.17236 0.94109 0.86766 1.00239 1.20164 1.00105 0.90768 1.15695 1.17502 0.88079 0.84754 1.00831 1.91356 1.69695 1.64059 1.89109 1.21476 0.90393 1.01625 1.07229 1.17268 0.92499 0.89511 0.88058 1.19551 0.98802 1.08297 1.22116 0.89995 1.25948 0.99693 0.95416 0.93469 1.69770 1.38256 1.16522 1.17366 0.86206 0.80881 0.78529 0.80553 1.19363 1.19948 1.18388 1.21358 0.95202 0.96386 1.11490 0.90363 0.88374 0.89931 0.78304 0.81445 0.87413 0.84870 0.90489 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 9.37 59.85 0.56 1.42 16 2 N -0.46 -7.35 3.17 -121.77 -0.39 -7.74 16 3 C 0.16 2.45 12.54 -90.28 -1.13 1.32 16 4 N -0.50 -8.93 11.22 -14.39 -0.16 -9.09 16 5 C -0.03 -0.53 11.27 -17.48 -0.20 -0.73 16 6 C 0.05 0.91 6.74 -82.07 -0.55 0.36 16 7 C 0.02 0.39 5.85 -105.05 -0.61 -0.22 16 8 C -0.25 -5.46 9.56 -38.84 -0.37 -5.83 16 9 C 0.11 2.56 7.27 -39.56 -0.29 2.27 16 10 F -0.16 -3.76 17.26 2.25 0.04 -3.73 16 11 C -0.19 -4.71 8.63 -38.74 -0.33 -5.05 16 12 C 0.13 3.20 5.54 -106.88 -0.59 2.61 16 13 C -0.46 -11.16 9.06 -37.74 -0.34 -11.50 16 14 H 0.08 1.88 7.87 -52.49 -0.41 1.46 16 15 C 0.07 1.71 5.26 -17.35 -0.09 1.62 16 16 N -0.79 -19.54 10.83 55.55 0.60 -18.94 16 17 Si 0.91 17.47 29.57 -169.99 -5.03 12.44 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 C -0.22 -4.99 8.44 -38.47 -0.32 -5.32 16 22 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 23 H 0.10 1.41 6.58 -51.93 -0.34 1.07 16 24 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.20 2.06 8.06 -52.48 -0.42 1.64 16 26 H 0.17 2.86 7.65 -52.49 -0.40 2.46 16 27 H 0.11 2.17 7.37 -52.49 -0.39 1.78 16 28 H 0.13 3.51 6.21 -52.48 -0.33 3.18 16 29 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 30 H 0.10 2.08 5.01 -52.49 -0.26 1.81 16 LS Contribution 265.78 15.07 4.01 4.01 Total: -1.00 -28.05 265.78 -7.72 -35.77 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.51 Total: 6.34 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -4.28 Total: -19.06 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.05 Total: -35.78 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.05 -7.72 -35.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243073112.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.465 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds