Wall clock time and date at job start Sun Mar 29 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33029 * 1 3 3 C 1.50702 * 119.99992 * 2 1 4 4 C 1.53002 * 109.47019 * 94.99749 * 3 2 1 5 5 C 1.47051 * 120.00152 * 179.97438 * 2 1 3 6 6 O 1.21614 * 119.99514 * 0.02562 * 5 2 1 7 7 N 1.34779 * 119.99987 * 180.02562 * 5 2 1 8 8 C 1.39155 * 119.99596 * 183.72283 * 7 5 2 9 9 C 1.39705 * 119.58001 * 338.97949 * 8 7 5 10 10 C 1.38644 * 119.49399 * 180.02562 * 9 8 7 11 11 C 1.38354 * 118.67017 * 359.72933 * 10 9 8 12 12 C 1.40574 * 119.13543 * 0.53641 * 11 10 9 13 13 C 1.41342 * 119.78731 * 179.72932 * 12 11 10 14 14 H 1.07998 * 119.99965 * 4.86564 * 13 12 11 15 15 C 1.40031 * 119.99988 * 184.86511 * 13 12 11 16 16 N 1.30740 * 119.99870 * 184.82343 * 15 13 12 17 17 Si 1.86795 * 120.00025 * 4.82014 * 15 13 12 18 18 H 1.48499 * 109.47186 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47337 * 300.00265 * 17 15 13 20 20 H 1.48506 * 109.47372 * 59.99938 * 17 15 13 21 21 N 1.31923 * 119.57420 * 159.00779 * 8 7 5 22 22 H 1.07994 * 120.00289 * 0.02562 * 1 2 3 23 23 H 1.08008 * 119.99712 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46740 * 215.00153 * 3 2 1 25 25 H 1.09004 * 109.46748 * 334.99755 * 3 2 1 26 26 H 1.09005 * 109.46580 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47174 * 299.99745 * 4 3 2 28 28 H 1.08998 * 109.46947 * 60.00247 * 4 3 2 29 29 H 0.96993 * 119.99929 * 3.71710 * 7 5 2 30 30 H 1.07994 * 120.25051 * 0.02562 * 9 8 7 31 31 H 1.07996 * 120.66601 * 180.02562 * 10 9 8 32 32 H 1.08007 * 120.43255 * 180.28463 * 11 10 9 33 33 H 0.97001 * 119.99856 * 354.98554 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3303 0.0000 0.0000 3 6 2.0838 1.3051 0.0000 4 6 2.4476 1.6839 1.4370 5 6 2.0656 -1.2735 0.0006 6 8 1.4574 -2.3267 0.0006 7 7 3.4134 -1.2734 0.0011 8 6 4.1091 -2.4761 -0.0766 9 6 3.4716 -3.6661 0.2827 10 6 4.1666 -4.8632 0.2051 11 6 5.4783 -4.8419 -0.2346 12 6 6.0657 -3.6114 -0.5763 13 6 7.4066 -3.5730 -1.0216 14 1 7.9516 -4.4929 -1.1737 15 6 8.0283 -2.3422 -1.2657 16 7 9.2353 -2.3077 -1.7669 17 14 7.1331 -0.7499 -0.8752 18 1 8.0008 0.4039 -1.2231 19 1 5.8780 -0.6809 -1.6660 20 1 6.8085 -0.7068 0.5732 21 7 5.3625 -2.4777 -0.4881 22 1 -0.5400 0.9352 -0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 2.9945 1.1988 -0.5895 25 1 1.4588 2.0854 -0.4344 26 1 2.9922 2.6282 1.4370 27 1 1.5369 1.7902 2.0264 28 1 3.0725 0.9036 1.8713 29 1 3.8983 -0.4352 0.0555 30 1 2.4452 -3.6536 0.6183 31 1 3.6922 -5.7943 0.4778 32 1 6.0448 -5.7584 -0.3104 33 1 9.7283 -3.1321 -1.9018 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263905785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:57 Heat of formation + Delta-G solvation = -15.049908 kcal Electronic energy + Delta-G solvation = -17456.954307 eV Core-core repulsion = 14674.788731 eV Total energy + Delta-G solvation = -2782.165576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81002 -40.00701 -36.51100 -36.34381 -35.31987 -33.02979 -31.38886 -31.09801 -27.41111 -25.68030 -24.15235 -23.66480 -22.51788 -20.78626 -19.94659 -18.61098 -17.95497 -17.00347 -16.73549 -16.35159 -15.83594 -15.57076 -15.00074 -14.80459 -14.69047 -14.50313 -14.21710 -13.76376 -13.72009 -13.11777 -12.94510 -12.77511 -12.24721 -12.15684 -11.84859 -11.73673 -11.67084 -11.16375 -10.71954 -10.44073 -10.38096 -9.73266 -9.38669 -9.20532 -6.85084 0.15890 0.67988 0.80309 1.52659 1.67182 1.84307 2.05984 2.14820 2.43990 2.64937 3.49009 3.56491 3.84660 4.04999 4.28595 4.37198 4.48173 4.61434 4.65397 4.67730 4.76170 4.83382 5.00564 5.12781 5.28780 5.33647 5.37187 5.39452 5.41956 5.51063 5.70365 5.80345 5.90858 6.27415 6.37948 6.61953 6.99563 7.45744 7.92407 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.008278 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.205975 B = 3381.519385 C = 4380.643719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.197 4.197 3 C -0.090 4.090 4 C -0.153 4.153 5 C 0.549 3.451 6 O -0.550 6.550 7 N -0.649 5.649 8 C 0.371 3.629 9 C -0.312 4.312 10 C -0.028 4.028 11 C -0.291 4.291 12 C 0.256 3.744 13 C -0.507 4.507 14 H 0.070 0.930 15 C 0.015 3.985 16 N -0.827 5.827 17 Si 1.183 2.817 18 H -0.326 1.326 19 H -0.278 1.278 20 H -0.292 1.292 21 N -0.612 5.612 22 H 0.160 0.840 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.415 0.585 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.964 9.225 4.681 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.200 4.200 3 C -0.128 4.128 4 C -0.210 4.210 5 C 0.341 3.659 6 O -0.429 6.429 7 N -0.294 5.294 8 C 0.140 3.860 9 C -0.336 4.336 10 C -0.052 4.052 11 C -0.313 4.313 12 C 0.131 3.869 13 C -0.540 4.540 14 H 0.088 0.912 15 C -0.202 4.202 16 N -0.450 5.450 17 Si 1.016 2.984 18 H -0.259 1.259 19 H -0.206 1.206 20 H -0.220 1.220 21 N -0.338 5.338 22 H 0.177 0.823 23 H 0.124 0.876 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.253 0.747 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.135 0.865 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.787 10.793 4.303 18.806 hybrid contribution 0.589 -2.890 0.083 2.950 sum -14.198 7.904 4.386 16.831 Atomic orbital electron populations 1.24960 0.93364 1.04900 0.87099 1.21560 0.96303 0.92287 1.09826 1.20699 1.00283 0.93143 0.98644 1.21838 1.02282 1.01667 0.95222 1.19352 0.80650 0.91240 0.74688 1.90621 1.68391 1.33818 1.50087 1.43336 1.07187 1.07973 1.70904 1.18528 0.88859 0.86476 0.92094 1.22115 1.03749 0.91560 1.16193 1.21375 0.92812 0.98116 0.92914 1.21792 0.97471 0.97825 1.14242 1.18488 0.92660 0.87432 0.88340 1.20727 0.96289 0.96018 1.40944 0.91212 1.28549 0.95452 1.07448 0.88758 1.70664 1.11368 1.33577 1.29389 0.81499 0.71671 0.68010 0.77267 1.25880 1.20558 1.22017 1.66018 1.08573 1.30572 1.28654 0.82261 0.87604 0.91946 0.87082 0.90468 0.91039 0.94555 0.74682 0.82845 0.83698 0.86549 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 13.90 66.66 0.93 -0.15 16 2 C -0.20 -4.40 5.25 -18.71 -0.10 -4.50 16 3 C -0.09 -1.54 5.52 29.85 0.16 -1.38 16 4 C -0.15 -2.45 9.89 71.98 0.71 -1.74 16 5 C 0.55 18.47 7.64 86.55 0.66 19.13 16 6 O -0.55 -21.53 12.88 -4.07 -0.05 -21.58 16 7 N -0.65 -24.58 5.34 -311.68 -1.67 -26.24 16 8 C 0.37 17.27 7.51 133.29 1.00 18.27 16 9 C -0.31 -13.99 8.89 22.72 0.20 -13.79 16 10 C -0.03 -1.20 10.15 22.39 0.23 -0.98 16 11 C -0.29 -14.00 9.83 22.87 0.22 -13.77 16 12 C 0.26 13.80 6.40 40.19 0.26 14.06 16 13 C -0.51 -28.76 9.57 23.47 0.22 -28.53 16 14 H 0.07 4.00 8.05 -2.91 -0.02 3.98 16 15 C 0.01 0.82 5.52 85.29 0.47 1.29 16 16 N -0.83 -46.35 13.65 21.84 0.30 -46.05 16 17 Si 1.18 57.06 25.61 68.60 1.76 58.82 16 18 H -0.33 -15.18 7.11 99.48 0.71 -14.48 16 19 H -0.28 -13.16 6.60 99.48 0.66 -12.50 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 21 N -0.61 -31.55 4.54 -186.41 -0.85 -32.40 16 22 H 0.16 1.24 8.02 -2.91 -0.02 1.22 16 23 H 0.11 2.01 7.49 -2.91 -0.02 1.99 16 24 H 0.06 1.22 7.02 -2.39 -0.02 1.20 16 25 H 0.11 1.21 8.01 -2.38 -0.02 1.19 16 26 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.42 14.06 7.08 -92.71 -0.66 13.40 16 30 H 0.15 6.69 5.17 -9.83 -0.05 6.64 16 31 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 32 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 33 H 0.28 15.26 8.72 -92.71 -0.81 14.45 16 Total: -1.00 -67.52 283.03 4.81 -62.71 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.34 Total: 16.83 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 4.97 Total: -12.09 kcal Atomic # 7 Polarization: -102.48 SS G_CDS: -2.21 Total: -104.69 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 57.06 SS G_CDS: 1.76 Total: 58.82 kcal Total: -67.52 4.81 -62.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263905785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.663 kcal (2) G-P(sol) polarization free energy of solvation -67.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds