Wall clock time and date at job start Sun Mar 29 2020 23:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47292 * 218.25236 * 3 2 1 5 5 C 1.37100 * 120.00193 * 95.48718 * 4 3 2 6 6 H 1.07997 * 120.00062 * 163.09109 * 5 4 3 7 7 C 1.38947 * 119.99887 * 343.08635 * 5 4 3 8 8 N 1.31419 * 120.00165 * 341.42678 * 7 5 4 9 9 Si 1.86794 * 120.00113 * 161.42694 * 7 5 4 10 10 H 1.48502 * 109.47128 * 59.99955 * 9 7 5 11 11 H 1.48503 * 109.47426 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47199 * 299.99931 * 9 7 5 13 13 C 1.34774 * 119.99654 * 275.48812 * 4 3 2 14 14 O 1.21300 * 119.99719 * 184.98666 * 13 4 3 15 15 C 1.50704 * 120.00382 * 4.99131 * 13 4 3 16 16 H 1.09002 * 109.46770 * 25.04938 * 15 13 4 17 17 C 1.52997 * 109.47141 * 145.04458 * 15 13 4 18 18 N 1.46500 * 109.47045 * 265.04751 * 15 13 4 19 19 C 1.36342 * 125.63455 * 299.69141 * 18 15 13 20 20 C 1.34848 * 108.21803 * 179.83077 * 19 18 15 21 21 C 1.40888 * 107.41613 * 0.42569 * 20 19 18 22 22 C 1.34858 * 107.41766 * 359.73424 * 21 20 19 23 23 H 4.40641 * 5.51488 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.47304 * 98.25075 * 3 2 1 25 25 H 1.09003 * 109.47584 * 338.25218 * 3 2 1 26 26 H 0.97003 * 120.00101 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47119 * 64.50628 * 17 15 13 28 28 H 1.08999 * 109.46990 * 184.50913 * 17 15 13 29 29 H 1.08998 * 109.47437 * 304.50560 * 17 15 13 30 30 H 1.08003 * 125.89131 * 359.96107 * 19 18 15 31 31 H 1.07999 * 126.29139 * 180.15373 * 20 19 18 32 32 H 1.08004 * 126.29230 * 179.73129 * 21 20 19 33 33 H 1.08002 * 125.88732 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0855 0.8551 5 6 3.4695 0.8318 2.1600 6 1 4.0747 1.5380 2.7090 7 6 3.0311 -0.3339 2.7760 8 7 2.0223 -1.0060 2.2684 9 14 3.8755 -0.9457 4.3258 10 1 3.7658 0.0851 5.3892 11 1 3.2233 -2.1991 4.7831 12 1 5.3083 -1.2093 4.0378 13 6 3.2527 2.3330 0.3591 14 8 3.7410 3.2117 1.0380 15 6 2.7787 2.6364 -1.0390 16 1 2.0064 1.9219 -1.3238 17 6 2.2047 4.0538 -1.0865 18 7 3.9057 2.5344 -1.9695 19 6 5.0455 3.2809 -1.9215 20 6 5.8442 2.8967 -2.9377 21 6 5.1687 1.8825 -3.6448 22 6 3.9853 1.6814 -3.0300 23 1 -1.0502 -0.0003 0.0000 24 1 3.0093 0.1483 -1.0170 25 1 3.0098 -0.9537 0.3808 26 1 1.7165 -1.8200 2.6983 27 1 2.9966 4.7737 -0.8798 28 1 1.7894 4.2445 -2.0761 29 1 1.4189 4.1529 -0.3376 30 1 5.2709 4.0464 -1.1936 31 1 6.8203 3.2964 -3.1699 32 1 5.5318 1.3617 -4.5185 33 1 3.2308 0.9680 -3.3270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321199884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:07 Heat of formation + Delta-G solvation = 73.493535 kcal Electronic energy + Delta-G solvation = -17965.443711 eV Core-core repulsion = 15187.117666 eV Total energy + Delta-G solvation = -2778.326044 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.27878 -40.37090 -37.30207 -35.08904 -33.89035 -33.12087 -30.24288 -29.57918 -28.46673 -27.15185 -24.84409 -21.86519 -21.32218 -20.23390 -19.78034 -18.63218 -18.43551 -17.80874 -16.69906 -16.12202 -15.79708 -15.34505 -14.89148 -14.67134 -14.43069 -14.16188 -13.96510 -13.63995 -13.30161 -13.15578 -13.00530 -12.91251 -12.82753 -12.56950 -12.47113 -12.18179 -11.29552 -11.15371 -10.75067 -10.58908 -9.93731 -9.45969 -9.01287 -8.40078 -6.02811 1.22055 1.37299 1.41745 1.49342 1.56717 1.95025 2.20959 2.25280 2.30238 2.40373 2.95299 3.00403 3.70092 3.72343 3.82311 4.06781 4.18762 4.41994 4.51767 4.60610 4.64157 4.76818 4.83706 4.89312 5.04420 5.36036 5.38287 5.43189 5.47435 5.91760 6.17416 6.30809 6.39182 6.51028 7.02220 7.06455 7.27525 7.81537 8.56881 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.007995 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.847639 B = 3501.309840 C = 3790.933628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.165 4.165 3 C 0.235 3.765 4 N -0.437 5.437 5 C -0.355 4.355 6 H 0.076 0.924 7 C 0.007 3.993 8 N -0.866 5.866 9 Si 0.986 3.014 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.270 1.270 13 C 0.429 3.571 14 O -0.616 6.616 15 C 0.129 3.871 16 H 0.117 0.883 17 C -0.136 4.136 18 N -0.437 5.437 19 C -0.025 4.025 20 C -0.212 4.212 21 C -0.207 4.207 22 C -0.027 4.027 23 H 0.239 0.761 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.276 0.724 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.158 0.842 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 0.460 -9.865 9.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.166 4.166 3 C 0.112 3.888 4 N -0.154 5.154 5 C -0.482 4.482 6 H 0.094 0.906 7 C -0.198 4.198 8 N -0.503 5.503 9 Si 0.809 3.191 10 H -0.203 1.203 11 H -0.193 1.193 12 H -0.195 1.195 13 C 0.217 3.783 14 O -0.502 6.502 15 C 0.023 3.977 16 H 0.135 0.865 17 C -0.194 4.194 18 N -0.114 5.114 19 C -0.155 4.155 20 C -0.236 4.236 21 C -0.231 4.231 22 C -0.156 4.156 23 H 0.255 0.745 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.176 0.824 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.327 0.696 -9.228 9.349 hybrid contribution 0.154 -0.313 1.236 1.284 sum -1.173 0.383 -7.992 8.087 Atomic orbital electron populations 1.25223 0.96277 1.00497 1.02640 1.23255 0.94693 1.00252 0.98403 1.18311 0.85101 0.92589 0.92759 1.43938 1.54630 1.06164 1.10698 1.19583 1.32534 1.07161 0.88961 0.90583 1.25992 0.95253 0.96511 1.02015 1.70124 1.21300 1.17292 1.41556 0.85113 0.78661 0.77728 0.77553 1.20293 1.19266 1.19500 1.20778 0.85344 0.82282 0.89894 1.90488 1.50288 1.46514 1.62930 1.21454 0.88352 1.01958 0.85953 0.86491 1.21865 1.01289 0.92650 1.03625 1.44212 1.14591 1.30139 1.22495 1.21914 0.88629 1.01893 1.03108 1.21128 1.01179 1.02776 0.98549 1.21150 0.95376 1.02887 1.03733 1.22373 1.01954 0.99751 0.91514 0.74500 0.89942 0.88549 0.91408 0.92148 0.88833 0.91123 0.83783 0.83360 0.82434 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.34 19.25 74.32 1.43 -6.91 16 2 C -0.16 -6.88 10.37 31.13 0.32 -6.55 16 3 C 0.23 10.30 4.78 84.57 0.40 10.70 16 4 N -0.44 -22.32 2.60 -645.40 -1.68 -23.99 16 5 C -0.35 -19.88 9.38 84.04 0.79 -19.09 16 6 H 0.08 4.60 7.33 -2.91 -0.02 4.58 16 7 C 0.01 0.34 4.95 84.92 0.42 0.76 16 8 N -0.87 -43.69 9.27 21.66 0.20 -43.49 16 9 Si 0.99 41.53 29.59 68.60 2.03 43.56 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 13 C 0.43 20.97 6.52 87.66 0.57 21.54 16 14 O -0.62 -34.56 16.00 -3.09 -0.05 -34.61 16 15 C 0.13 4.79 2.44 44.25 0.11 4.90 16 16 H 0.12 4.04 5.67 -2.39 -0.01 4.03 16 17 C -0.14 -4.44 8.87 71.98 0.64 -3.80 16 18 N -0.44 -15.28 2.59 -505.90 -1.31 -16.59 16 19 C -0.03 -0.92 10.41 83.21 0.87 -0.05 16 20 C -0.21 -6.61 10.86 22.14 0.24 -6.37 16 21 C -0.21 -5.89 10.86 22.14 0.24 -5.65 16 22 C -0.03 -0.80 10.60 83.22 0.88 0.08 16 23 H 0.24 6.47 7.80 -4.41 -0.03 6.43 16 24 H 0.08 3.12 6.19 -2.39 -0.01 3.11 16 25 H 0.10 4.56 6.33 -2.39 -0.02 4.55 16 26 H 0.28 13.14 8.31 -92.71 -0.77 12.37 16 27 H 0.06 2.10 7.64 -2.39 -0.02 2.08 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.14 5.43 8.06 -2.91 -0.02 5.41 16 31 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.18 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -65.44 288.46 7.21 -58.24 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 1.10 Total: 27.33 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 6.91 Total: -10.44 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -2.79 Total: -84.08 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.05 Total: -34.61 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -65.44 7.21 -58.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.729 kcal (2) G-P(sol) polarization free energy of solvation -65.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds