Wall clock time and date at job start Sun Mar 29 2020 23:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47090 * 268.24333 * 3 2 1 5 5 C 1.37101 * 119.99776 * 265.41199 * 4 3 2 6 6 H 1.07998 * 120.00085 * 198.15365 * 5 4 3 7 7 C 1.38954 * 119.99838 * 18.15742 * 5 4 3 8 8 N 1.31408 * 120.00248 * 21.26649 * 7 5 4 9 9 Si 1.86803 * 119.99844 * 201.27039 * 7 5 4 10 10 H 1.48502 * 109.47037 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47336 * 119.99710 * 9 7 5 12 12 H 1.48499 * 109.46822 * 240.00073 * 9 7 5 13 13 C 1.34769 * 120.00149 * 85.41825 * 4 3 2 14 14 O 1.21290 * 120.00249 * 185.44762 * 13 4 3 15 15 C 1.50698 * 119.99930 * 5.44160 * 13 4 3 16 16 H 1.08999 * 109.47447 * 26.01823 * 15 13 4 17 17 C 1.53000 * 109.47372 * 266.01481 * 15 13 4 18 18 N 1.46502 * 109.47184 * 146.01810 * 15 13 4 19 19 C 1.36342 * 125.63374 * 59.69168 * 18 15 13 20 20 C 1.34854 * 108.21825 * 179.83156 * 19 18 15 21 21 C 1.40890 * 107.41434 * 0.42697 * 20 19 18 22 22 C 1.34851 * 107.41951 * 359.73660 * 21 20 19 23 23 H 4.40644 * 5.51463 * 179.97438 * 4 1 2 24 24 H 1.09005 * 109.47250 * 148.24143 * 3 2 1 25 25 H 1.09002 * 109.47400 * 28.24247 * 3 2 1 26 26 H 0.96997 * 120.00142 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47678 * 300.12038 * 17 15 13 28 28 H 1.09001 * 109.47006 * 60.11909 * 17 15 13 29 29 H 1.09001 * 109.47446 * 180.11900 * 17 15 13 30 30 H 1.07998 * 125.89231 * 359.96531 * 19 18 15 31 31 H 1.08002 * 126.29081 * 180.16060 * 20 19 18 32 32 H 1.07998 * 126.28859 * 179.73299 * 21 20 19 33 33 H 1.07998 * 125.88959 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1343 0.0432 1.3806 5 6 3.4517 1.2452 1.9586 6 1 4.0739 1.2725 2.8410 7 6 2.9730 2.4283 1.4092 8 7 1.9157 2.4099 0.6290 9 14 3.8323 4.0450 1.7797 10 1 4.9886 3.7966 2.6778 11 1 4.3112 4.6529 0.5122 12 1 2.8801 4.9708 2.4440 13 6 3.2715 -1.0991 2.0824 14 8 3.5805 -1.0575 3.2545 15 6 3.0409 -2.4283 1.4108 16 1 3.2308 -2.3331 0.3417 17 6 1.5926 -2.8683 1.6343 18 7 3.9482 -3.4274 1.9808 19 6 3.9967 -3.8004 3.2913 20 6 4.9525 -4.7421 3.4265 21 6 5.5214 -4.9511 2.1546 22 6 4.8876 -4.1335 1.2895 23 1 -1.0501 0.0002 0.0000 24 1 3.0089 0.8746 -0.5409 25 1 3.0097 -0.9045 -0.4863 26 1 1.5817 3.2357 0.2452 27 1 1.4021 -2.9616 2.7034 28 1 0.9176 -2.1260 1.2083 29 1 1.4264 -3.8307 1.1503 30 1 3.3753 -3.4108 4.0839 31 1 5.2335 -5.2408 4.3423 32 1 6.3186 -5.6396 1.9163 33 1 5.0896 -4.0519 0.2318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321199892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:09 Heat of formation + Delta-G solvation = 93.072149 kcal Electronic energy + Delta-G solvation = -17855.905269 eV Core-core repulsion = 15078.428217 eV Total energy + Delta-G solvation = -2777.477052 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82447 -38.66009 -35.35895 -33.65211 -32.06728 -31.38366 -28.90134 -28.20854 -26.70404 -25.28117 -23.36357 -20.30334 -19.98470 -18.82613 -18.03498 -16.79230 -16.52160 -16.40133 -14.88737 -14.48924 -14.26438 -13.68187 -13.30358 -13.20417 -13.01427 -12.51149 -12.42889 -11.92535 -11.89953 -11.72728 -11.55262 -11.47771 -11.21156 -11.08496 -10.57745 -10.39482 -9.47045 -9.40313 -9.04182 -8.74608 -8.02974 -8.00331 -7.61025 -6.45981 -4.00351 2.77601 3.03926 3.18723 3.24123 3.31956 3.50447 3.54731 3.83472 3.93773 4.08286 4.64927 4.90124 5.08225 5.27178 5.33883 5.47661 5.54032 5.80100 5.85839 5.93840 6.05181 6.10120 6.12601 6.34604 6.56160 6.72771 6.81141 6.88611 7.43705 7.50507 7.75340 7.80141 7.95417 8.26918 8.67558 8.97335 9.17697 9.70041 10.53397 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027708 B = 0.007502 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.291300 B = 3731.505406 C = 4349.069581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.115 4.115 3 C 0.228 3.772 4 N -0.431 5.431 5 C -0.315 4.315 6 H 0.105 0.895 7 C 0.034 3.966 8 N -0.858 5.858 9 Si 0.923 3.077 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.438 3.562 14 O -0.566 6.566 15 C 0.116 3.884 16 H 0.104 0.896 17 C -0.153 4.153 18 N -0.426 5.426 19 C 0.032 3.968 20 C -0.227 4.227 21 C -0.204 4.204 22 C -0.029 4.029 23 H 0.200 0.800 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.270 0.730 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -7.805 -3.975 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.116 4.116 3 C 0.104 3.896 4 N -0.149 5.149 5 C -0.442 4.442 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.495 5.495 9 Si 0.749 3.251 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.225 3.775 14 O -0.449 6.449 15 C 0.010 3.990 16 H 0.122 0.878 17 C -0.211 4.211 18 N -0.101 5.101 19 C -0.100 4.100 20 C -0.251 4.251 21 C -0.229 4.229 22 C -0.159 4.159 23 H 0.217 0.783 24 H 0.128 0.872 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.090 -7.346 -3.649 8.203 hybrid contribution -0.018 1.088 0.004 1.088 sum -0.108 -6.258 -3.646 7.243 Atomic orbital electron populations 1.24274 0.95350 1.06002 1.01503 1.22980 0.94167 0.95658 0.98826 1.18299 0.84652 1.01321 0.85286 1.43716 1.55529 1.05657 1.10011 1.19731 1.29454 0.81094 1.13953 0.87710 1.25334 0.94885 0.99724 0.97190 1.70069 1.18651 1.28565 1.32254 0.85924 0.79650 0.81143 0.78410 1.19106 1.20446 1.20731 1.19921 0.85536 0.84701 0.87329 1.90557 1.52491 1.86253 1.15582 1.21391 0.90911 0.88001 0.98674 0.87778 1.22065 0.93479 1.02084 1.03509 1.43985 1.28082 1.30039 1.07993 1.21789 1.02993 0.99187 0.85989 1.20765 1.02173 1.04297 0.97893 1.20725 1.04077 1.04572 0.93569 1.21719 0.96134 0.99985 0.98014 0.78264 0.87165 0.91996 0.91968 0.91482 0.89716 0.91745 0.82499 0.85416 0.85416 0.82833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.85 18.63 29.55 0.55 -4.30 16 2 C -0.11 -2.39 9.82 -37.12 -0.36 -2.75 16 3 C 0.23 4.73 4.96 -6.83 -0.03 4.70 16 4 N -0.43 -10.45 2.59 -117.93 -0.31 -10.75 16 5 C -0.32 -8.42 9.29 -14.93 -0.14 -8.56 16 6 H 0.11 2.99 7.44 -52.49 -0.39 2.60 16 7 C 0.03 0.85 4.87 -17.47 -0.09 0.76 16 8 N -0.86 -21.61 9.42 55.50 0.52 -21.09 16 9 Si 0.92 19.93 29.60 -169.99 -5.03 14.90 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.44 10.33 6.71 -10.99 -0.07 10.26 16 14 O -0.57 -15.36 14.83 5.55 0.08 -15.27 16 15 C 0.12 2.15 2.81 -69.08 -0.19 1.96 16 16 H 0.10 1.70 5.76 -51.93 -0.30 1.40 16 17 C -0.15 -2.53 9.22 37.16 0.34 -2.19 16 18 N -0.43 -7.87 2.60 -111.26 -0.29 -8.16 16 19 C 0.03 0.60 9.47 -16.75 -0.16 0.44 16 20 C -0.23 -3.91 10.86 -39.78 -0.43 -4.34 16 21 C -0.20 -3.31 10.86 -39.78 -0.43 -3.74 16 22 C -0.03 -0.48 11.39 -16.75 -0.19 -0.67 16 23 H 0.20 3.11 7.80 -54.09 -0.42 2.68 16 24 H 0.11 2.42 6.57 -51.93 -0.34 2.08 16 25 H 0.06 1.05 5.85 -51.93 -0.30 0.75 16 26 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 27 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 28 H 0.08 1.44 5.71 -51.93 -0.30 1.14 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.16 3.02 7.68 -52.49 -0.40 2.61 16 31 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 284.61 15.07 4.29 4.29 Total: -1.00 -30.44 284.61 -5.64 -36.08 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.69 Total: 8.44 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -1.21 Total: -8.43 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.07 Total: -40.00 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.44 -5.64 -36.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.152 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds