Wall clock time and date at job start Sun Mar 29 2020 22:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86807 * 119.99860 * 2 1 4 4 H 1.48495 * 109.46916 * 240.00070 * 3 2 1 5 5 H 1.48503 * 109.46778 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47182 * 119.99851 * 3 2 1 7 7 C 1.37874 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00221 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47275 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.46773 * 179.97438 * 11 10 9 13 13 C 1.34230 * 116.99748 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00154 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99802 * 179.97438 * 13 12 11 16 16 F 1.39902 * 110.82791 * 56.35551 * 15 13 12 17 17 C 1.54807 * 110.90394 * 179.97438 * 15 13 12 18 18 C 1.54105 * 104.18504 * 139.08340 * 17 15 13 19 19 O 1.43746 * 107.42259 * 1.95340 * 18 17 15 20 20 C 1.44586 * 106.86832 * 333.67423 * 19 18 17 21 21 H 0.97001 * 119.99907 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47195 * 59.99801 * 9 7 2 23 23 H 1.09007 * 109.47253 * 300.00014 * 9 7 2 24 24 H 1.09005 * 109.46763 * 59.99981 * 10 9 7 25 25 H 1.08998 * 109.46737 * 299.99982 * 10 9 7 26 26 H 1.08997 * 109.46986 * 60.00302 * 11 10 9 27 27 H 1.08998 * 109.47444 * 299.99685 * 11 10 9 28 28 H 1.08996 * 110.48875 * 20.40608 * 17 15 13 29 29 H 1.09003 * 110.60294 * 257.81100 * 17 15 13 30 30 H 1.09002 * 109.88076 * 121.45430 * 18 17 15 31 31 H 1.08996 * 109.87584 * 242.45546 * 18 17 15 32 32 H 1.08999 * 110.50225 * 281.37988 * 20 19 18 33 33 H 1.08994 * 110.77338 * 158.50734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9871 0.0025 12 8 2.4240 -6.0907 0.0031 13 6 1.9110 -7.3311 0.0032 14 8 0.7132 -7.4894 0.0032 15 6 2.8291 -8.5262 0.0032 16 9 3.7066 -8.4793 1.0917 17 6 2.0187 -9.8452 0.0039 18 6 2.7826 -10.7583 -0.9746 19 8 3.9339 -10.0300 -1.4333 20 6 3.6088 -8.6247 -1.3327 21 1 -0.4850 0.8401 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8714 -3.6039 0.8923 25 1 2.8727 -3.6047 -0.8877 26 1 0.8542 -5.0455 -0.8878 27 1 0.8534 -5.0443 0.8922 28 1 1.0035 -9.6695 -0.3517 29 1 2.0019 -10.2845 1.0014 30 1 3.0988 -11.6675 -0.4632 31 1 2.1435 -11.0121 -1.8203 32 1 2.9795 -8.3177 -2.1680 33 1 4.5149 -8.0202 -1.2938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324504031.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:54 Heat of formation + Delta-G solvation = -209.835730 kcal Electronic energy + Delta-G solvation = -17711.539245 eV Core-core repulsion = 14457.865146 eV Total energy + Delta-G solvation = -3253.674099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.21779 -41.84995 -39.97249 -38.10038 -35.99136 -33.78040 -33.11910 -30.68904 -29.02723 -25.98158 -24.69644 -23.68432 -22.23468 -21.57548 -19.55076 -18.73914 -18.34752 -18.04960 -17.52832 -16.82359 -16.50918 -16.42532 -16.01719 -15.64786 -15.35410 -14.96032 -14.29769 -13.99539 -13.93724 -13.86054 -13.51730 -12.86091 -12.82590 -12.62861 -12.56124 -12.49623 -12.28436 -12.17105 -11.80194 -11.49222 -11.44657 -11.26128 -10.84073 -10.57342 -8.22617 -6.34148 0.63217 1.15036 1.41956 1.44617 1.52694 2.40551 2.54308 2.72404 2.99519 3.11468 3.35593 3.43525 3.83982 3.94120 3.95599 4.00709 4.34342 4.39803 4.47945 4.66781 4.73947 4.75722 4.76647 4.85978 5.02541 5.19799 5.46989 5.54618 5.61771 5.78838 6.16608 6.28003 6.81378 7.35535 8.89261 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.055345 B = 0.003756 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.795759 B = 7452.071570 C = 7655.380244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.096 4.096 11 C 0.074 3.926 12 O -0.347 6.347 13 C 0.453 3.547 14 O -0.505 6.505 15 C 0.095 3.905 16 F -0.179 7.179 17 C -0.166 4.166 18 C 0.045 3.955 19 O -0.377 6.377 20 C 0.041 3.959 21 H 0.265 0.735 22 H 0.000 1.000 23 H -0.003 1.003 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 -20.614 -2.096 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.133 4.133 11 C 0.001 3.999 12 O -0.262 6.262 13 C 0.294 3.706 14 O -0.393 6.393 15 C 0.075 3.925 16 F -0.159 7.159 17 C -0.203 4.203 18 C -0.031 4.031 19 O -0.296 6.296 20 C -0.036 4.036 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.711 -20.605 -2.142 21.489 hybrid contribution -0.356 1.268 0.399 1.376 sum 5.355 -19.337 -1.743 20.140 Atomic orbital electron populations 1.70087 1.07835 1.28021 1.51345 1.25988 0.95779 1.03452 0.94547 0.85459 0.78222 0.77852 0.79282 1.19001 1.20923 1.19154 1.21600 0.93765 0.91917 1.51068 0.91709 1.18934 0.94233 0.92308 0.95632 1.21489 0.98843 0.90279 1.02730 1.23326 0.90850 0.83144 1.02531 1.86531 1.42281 1.15070 1.82364 1.23883 0.88597 0.85254 0.72846 1.90681 1.17024 1.86677 1.44897 1.22431 0.88886 0.92530 0.88610 1.92962 1.70004 1.97150 1.55771 1.23648 1.01239 0.90666 1.04774 1.23469 0.86921 0.95492 0.97201 1.88998 1.37956 1.16110 1.86554 1.24214 1.01911 0.84997 0.92492 0.92649 0.98133 0.98460 0.91668 0.91091 0.90750 0.91525 0.86861 0.86847 0.86753 0.89289 0.88153 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.10 -3.87 5.53 30.60 0.17 -3.70 16 11 C 0.07 2.63 5.47 71.98 0.39 3.03 16 12 O -0.35 -11.00 10.22 -51.41 -0.53 -11.53 16 13 C 0.45 12.85 7.05 71.24 0.50 13.36 16 14 O -0.50 -16.12 15.20 21.98 0.33 -15.79 16 15 C 0.10 2.10 1.69 -10.24 -0.02 2.08 16 16 F -0.18 -4.50 16.99 44.97 0.76 -3.73 16 17 C -0.17 -2.67 6.25 31.58 0.20 -2.47 16 18 C 0.05 0.58 7.69 72.36 0.56 1.14 16 19 O -0.38 -7.09 11.54 -148.98 -1.72 -8.81 16 20 C 0.04 0.75 6.97 72.66 0.51 1.26 16 21 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 22 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 23 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 24 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16 27 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 28 H 0.11 1.88 6.86 -2.39 -0.02 1.86 16 29 H 0.11 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -65.88 290.62 5.41 -60.47 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.10 Total: 3.28 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 3.15 Total: -13.61 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.28 Total: -55.89 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.91 Total: -36.12 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.76 Total: -3.73 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -65.88 5.41 -60.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324504031.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.367 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds