Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47149 * 270.00144 * 3 2 1 5 5 H 1.48498 * 109.47207 * 29.99988 * 3 2 1 6 6 H 1.48504 * 109.47481 * 150.00091 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00167 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00137 * 179.97438 * 10 9 7 12 12 O 1.21580 * 120.00495 * 4.98124 * 11 10 9 13 13 N 1.34787 * 119.99838 * 184.98173 * 11 10 9 14 14 C 1.46923 * 120.63140 * 174.76940 * 13 11 10 15 15 C 1.53187 * 108.77541 * 126.41122 * 14 13 11 16 16 C 1.53041 * 109.33555 * 54.62252 * 15 14 13 17 17 H 1.08994 * 109.46467 * 58.67280 * 16 15 14 18 18 O 1.42902 * 109.46148 * 178.63084 * 16 15 14 19 19 C 1.53039 * 109.54059 * 298.67923 * 16 15 14 20 20 H 1.09007 * 109.47458 * 301.36793 * 19 16 15 21 21 F 1.39897 * 109.52552 * 181.30039 * 19 16 15 22 22 C 1.46927 * 120.62759 * 354.79421 * 13 11 10 23 23 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47726 * 59.99506 * 9 7 2 25 25 H 1.09006 * 109.47204 * 299.99360 * 9 7 2 26 26 H 0.97002 * 119.99451 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.58508 * 6.62781 * 14 13 11 28 28 H 1.09000 * 109.70585 * 246.27444 * 14 13 11 29 29 H 1.08998 * 109.49892 * 174.58501 * 15 14 13 30 30 H 1.08998 * 109.50374 * 294.65475 * 15 14 13 31 31 H 0.96696 * 114.00402 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.58971 * 353.37199 * 22 13 11 33 33 H 1.08999 * 109.58435 * 113.65949 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0011 12 8 0.5620 -5.1069 -0.0899 13 7 2.6254 -5.9064 0.1024 14 6 2.1455 -7.2900 0.2194 15 6 2.8121 -8.1369 -0.8692 16 6 4.3318 -7.9880 -0.7674 17 1 4.6623 -8.3049 0.2217 18 8 4.9576 -8.8019 -1.7615 19 6 4.7188 -6.5240 -0.9887 20 1 4.3673 -6.1993 -1.9682 21 9 6.1102 -6.3933 -0.9250 22 6 4.0737 -5.6588 0.0985 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4355 0.0009 27 1 1.0635 -7.3137 0.0894 28 1 2.4043 -7.6871 1.2010 29 1 2.5392 -9.1835 -0.7341 30 1 2.4782 -7.7975 -1.8497 31 1 5.9235 -8.7567 -1.7559 32 1 4.2640 -4.6063 -0.1112 33 1 4.4914 -5.9190 1.0711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336812786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = -129.181108 kcal Electronic energy + Delta-G solvation = -18261.385977 eV Core-core repulsion = 15043.502076 eV Total energy + Delta-G solvation = -3217.883901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.98503 -39.98127 -37.91350 -35.78426 -34.34208 -32.59202 -31.36559 -30.50115 -27.24603 -24.84870 -23.53079 -22.46420 -21.07028 -19.40264 -18.40265 -17.75327 -16.37111 -16.32012 -15.92913 -15.75183 -15.20819 -14.90325 -14.57238 -14.16043 -13.73723 -13.26117 -13.21744 -12.86874 -12.69722 -12.06758 -11.93683 -11.78998 -11.66445 -11.29079 -11.01996 -10.91621 -10.89984 -10.32188 -10.12748 -9.48493 -9.39074 -8.78033 -8.61487 -7.83673 -6.17668 -4.24625 2.93125 3.23775 3.30148 3.32502 3.62231 3.89631 4.02979 4.27577 4.34401 4.41649 4.57114 4.63115 4.93715 5.10596 5.18620 5.31096 5.33859 5.40009 5.56529 5.69159 5.85200 6.01216 6.56103 6.98336 7.26706 7.42472 7.46701 7.52761 7.77285 7.97694 8.68685 8.82126 9.21148 9.43000 10.92539 Molecular weight = 246.12amu Principal moments of inertia in cm(-1) A = 0.034472 B = 0.005233 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.047779 B = 5349.510640 C = 6012.311013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.728 5.728 11 C 0.699 3.301 12 O -0.591 6.591 13 N -0.638 5.638 14 C 0.130 3.870 15 C -0.127 4.127 16 C 0.087 3.913 17 H 0.068 0.932 18 O -0.560 6.560 19 C 0.044 3.956 20 H 0.097 0.903 21 F -0.207 7.207 22 C 0.093 3.907 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.025 0.975 26 H 0.386 0.614 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.382 0.618 32 H 0.096 0.904 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 -14.734 -0.025 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.382 5.382 11 C 0.400 3.600 12 O -0.470 6.470 13 N -0.378 5.378 14 C 0.007 3.993 15 C -0.165 4.165 16 C 0.027 3.973 17 H 0.086 0.914 18 O -0.366 6.366 19 C 0.006 3.994 20 H 0.115 0.885 21 F -0.188 7.188 22 C -0.032 4.032 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.220 0.780 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.230 0.770 32 H 0.114 0.886 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.165 -14.833 -0.205 17.437 hybrid contribution 1.702 1.227 0.108 2.101 sum 10.867 -13.606 -0.096 17.413 Atomic orbital electron populations 1.69973 1.06097 1.27331 1.48803 1.24934 0.94911 0.99400 0.94676 0.86409 0.79603 0.82616 0.78237 1.20448 1.20977 1.19761 1.21201 0.93224 0.90405 1.53346 0.92004 1.19032 0.87776 0.81026 0.97746 1.45935 1.10934 1.04425 1.76860 1.16028 0.84745 0.80998 0.78222 1.90874 1.14129 1.83676 1.58287 1.47254 1.04266 1.06521 1.79784 1.21403 1.01385 0.79358 0.97186 1.21940 0.91524 1.01683 1.01392 1.22361 0.94944 0.87877 0.92096 0.91370 1.86519 1.24795 1.68014 1.57318 1.22809 0.75934 0.98211 1.02432 0.88471 1.92804 1.31116 1.97003 1.97895 1.22002 0.81892 1.00841 0.98455 0.92415 0.95535 0.95653 0.77954 0.87626 0.91581 0.89242 0.90220 0.77033 0.88569 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.04 5.43 -5.20 -0.03 7.01 16 10 N -0.73 -15.51 5.46 -66.41 -0.36 -15.87 16 11 C 0.70 14.25 8.29 -86.91 -0.72 13.53 16 12 O -0.59 -14.42 15.77 5.30 0.08 -14.34 16 13 N -0.64 -9.49 2.97 -178.50 -0.53 -10.02 16 14 C 0.13 1.58 6.44 -3.71 -0.02 1.56 16 15 C -0.13 -1.32 5.73 -26.61 -0.15 -1.47 16 16 C 0.09 0.85 3.22 -26.69 -0.09 0.76 16 17 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 18 O -0.56 -5.63 13.32 -35.23 -0.47 -6.10 16 19 C 0.04 0.47 3.70 -26.61 -0.10 0.38 16 20 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 21 F -0.21 -2.29 16.67 2.25 0.04 -2.26 16 22 C 0.09 1.11 6.13 -3.71 -0.02 1.08 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 7.10 5.81 -40.82 -0.24 6.86 16 27 H 0.11 1.47 7.00 -51.93 -0.36 1.11 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.38 2.59 8.69 45.56 0.40 2.98 16 32 H 0.10 1.18 5.65 -51.93 -0.29 0.88 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 280.19 15.07 4.22 4.22 Total: -1.00 -32.69 280.19 -6.27 -38.96 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.41 Total: 5.36 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.55 Total: 9.53 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.16 Total: -51.12 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.39 Total: -20.43 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.69 -6.27 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336812786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.225 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds