Wall clock time and date at job start Sun Mar 29 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47149 * 270.00144 * 3 2 1 5 5 H 1.48498 * 109.47207 * 29.99988 * 3 2 1 6 6 H 1.48504 * 109.47481 * 150.00091 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00167 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47548 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00137 * 179.97438 * 10 9 7 12 12 O 1.21580 * 120.00495 * 4.98124 * 11 10 9 13 13 N 1.34787 * 119.99838 * 184.98173 * 11 10 9 14 14 C 1.46923 * 120.63140 * 174.76940 * 13 11 10 15 15 C 1.53187 * 108.77541 * 126.41122 * 14 13 11 16 16 C 1.53041 * 109.33555 * 54.62252 * 15 14 13 17 17 H 1.08994 * 109.46467 * 58.67280 * 16 15 14 18 18 O 1.42902 * 109.46148 * 178.63084 * 16 15 14 19 19 C 1.53039 * 109.54059 * 298.67923 * 16 15 14 20 20 H 1.09007 * 109.47458 * 301.36793 * 19 16 15 21 21 F 1.39897 * 109.52552 * 181.30039 * 19 16 15 22 22 C 1.46927 * 120.62759 * 354.79421 * 13 11 10 23 23 H 0.96998 * 120.00096 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47726 * 59.99506 * 9 7 2 25 25 H 1.09006 * 109.47204 * 299.99360 * 9 7 2 26 26 H 0.97002 * 119.99451 * 0.02562 * 10 9 7 27 27 H 1.09004 * 109.58508 * 6.62781 * 14 13 11 28 28 H 1.09000 * 109.70585 * 246.27444 * 14 13 11 29 29 H 1.08998 * 109.49892 * 174.58501 * 15 14 13 30 30 H 1.08998 * 109.50374 * 294.65475 * 15 14 13 31 31 H 0.96696 * 114.00402 * 179.97438 * 18 16 15 32 32 H 1.09001 * 109.58971 * 353.37199 * 22 13 11 33 33 H 1.08999 * 109.58435 * 113.65949 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8833 0.0011 12 8 0.5620 -5.1069 -0.0899 13 7 2.6254 -5.9064 0.1024 14 6 2.1455 -7.2900 0.2194 15 6 2.8121 -8.1369 -0.8692 16 6 4.3318 -7.9880 -0.7674 17 1 4.6623 -8.3049 0.2217 18 8 4.9576 -8.8019 -1.7615 19 6 4.7188 -6.5240 -0.9887 20 1 4.3673 -6.1993 -1.9682 21 9 6.1102 -6.3933 -0.9250 22 6 4.0737 -5.6588 0.0985 23 1 -0.4850 0.8400 0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 3.1566 -3.4355 0.0009 27 1 1.0635 -7.3137 0.0894 28 1 2.4043 -7.6871 1.2010 29 1 2.5392 -9.1835 -0.7341 30 1 2.4782 -7.7975 -1.8497 31 1 5.9235 -8.7567 -1.7559 32 1 4.2640 -4.6063 -0.1112 33 1 4.4914 -5.9190 1.0711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336812786.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:20 Heat of formation + Delta-G solvation = -155.090483 kcal Electronic energy + Delta-G solvation = -18262.509491 eV Core-core repulsion = 15043.502076 eV Total energy + Delta-G solvation = -3219.007416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.117 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.86103 -41.39585 -39.00686 -36.88744 -36.24652 -34.48350 -32.58868 -31.50953 -29.20177 -26.08391 -24.80631 -24.01288 -22.22331 -20.90329 -19.76033 -18.64452 -18.05354 -17.64180 -17.18238 -16.71421 -16.59727 -16.44574 -16.00036 -15.27596 -15.11846 -14.78038 -14.36992 -14.07752 -13.92582 -13.71692 -13.57858 -12.94783 -12.91564 -12.71248 -12.55818 -12.24906 -12.19933 -11.84016 -11.48335 -11.24293 -10.86816 -10.81231 -10.13538 -9.53845 -8.28840 -6.45446 1.43456 1.46282 1.56153 1.62468 2.09413 2.37909 2.97405 3.03654 3.06616 3.27090 3.42734 3.55569 3.77437 4.05395 4.19245 4.32262 4.45772 4.57837 4.67784 4.77470 4.86875 5.06179 5.14609 5.25992 5.42788 5.47982 5.63877 5.82687 5.99290 6.65391 6.68954 7.08257 7.24578 7.60753 8.83457 Molecular weight = 246.12amu Principal moments of inertia in cm(-1) A = 0.034472 B = 0.005233 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.047779 B = 5349.510640 C = 6012.311013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.256 1.256 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.284 3.716 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.639 6.639 13 N -0.627 5.627 14 C 0.126 3.874 15 C -0.120 4.120 16 C 0.093 3.907 17 H 0.093 0.907 18 O -0.572 6.572 19 C 0.052 3.948 20 H 0.084 0.916 21 F -0.205 7.205 22 C 0.089 3.911 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.011 1.011 26 H 0.402 0.598 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.396 0.604 32 H 0.091 0.909 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 -15.230 0.488 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.161 3.839 10 N -0.379 5.379 11 C 0.397 3.603 12 O -0.521 6.521 13 N -0.365 5.365 14 C 0.004 3.996 15 C -0.158 4.158 16 C 0.033 3.967 17 H 0.111 0.889 18 O -0.380 6.380 19 C 0.014 3.986 20 H 0.102 0.898 21 F -0.186 7.186 22 C -0.035 4.035 23 H 0.078 0.922 24 H 0.004 0.996 25 H 0.007 0.993 26 H 0.239 0.761 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.247 0.753 32 H 0.109 0.891 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.022 -15.393 0.307 19.534 hybrid contribution 0.858 1.266 -0.063 1.531 sum 12.880 -14.127 0.244 19.119 Atomic orbital electron populations 1.70133 1.08244 1.28605 1.49822 1.26033 0.95758 1.03777 0.93795 0.85155 0.78500 0.76980 0.78565 1.19693 1.20873 1.17927 1.21570 0.94215 0.90490 1.53110 0.90010 1.18451 0.88083 0.83245 0.94138 1.45530 1.10926 1.03970 1.77505 1.16180 0.84774 0.81550 0.77792 1.90839 1.16592 1.84467 1.60179 1.47198 1.05076 1.06210 1.78020 1.21637 1.00374 0.77938 0.99655 1.21849 0.92159 1.02314 0.99479 1.22316 0.94210 0.86913 0.93252 0.88918 1.86488 1.26275 1.67792 1.57494 1.22669 0.75829 0.98896 1.01228 0.89798 1.92813 1.30902 1.97061 1.97822 1.22234 0.79727 1.01040 1.00482 0.92194 0.99579 0.99323 0.76062 0.89951 0.88308 0.87030 0.92228 0.75314 0.89097 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 9 C 0.28 15.75 5.43 85.63 0.47 16.22 16 10 N -0.72 -31.43 5.46 -482.29 -2.63 -34.06 16 11 C 0.70 28.96 8.29 179.05 1.49 30.45 16 12 O -0.64 -32.60 15.77 -3.97 -0.06 -32.66 16 13 N -0.63 -18.02 2.97 -836.91 -2.49 -20.50 16 14 C 0.13 2.88 6.44 86.36 0.56 3.43 16 15 C -0.12 -2.23 5.73 30.67 0.18 -2.06 16 16 C 0.09 1.52 3.22 30.62 0.10 1.62 16 17 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 18 O -0.57 -9.79 13.32 -148.98 -1.98 -11.78 16 19 C 0.05 0.99 3.70 30.67 0.11 1.10 16 20 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 21 F -0.21 -3.93 16.67 44.97 0.75 -3.18 16 22 C 0.09 1.90 6.13 86.36 0.53 2.43 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 25 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 26 H 0.40 14.59 5.81 -92.71 -0.54 14.05 16 27 H 0.08 2.31 7.00 -2.39 -0.02 2.30 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.40 4.13 8.69 -74.06 -0.64 3.49 16 32 H 0.09 2.05 5.65 -2.39 -0.01 2.03 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -73.06 280.19 -0.02 -73.08 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.04 Total: 16.67 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 4.12 Total: 23.96 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.83 Total: -110.25 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -2.05 Total: -44.44 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.75 Total: -3.18 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -73.06 -0.02 -73.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336812786.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.009 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds