Wall clock time and date at job start Sun Mar 29 2020 22:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48509 * 109.47158 * 269.99690 * 3 2 1 5 5 H 1.48503 * 109.47252 * 29.99492 * 3 2 1 6 6 H 1.48505 * 109.47321 * 149.99839 * 3 2 1 7 7 C 1.37876 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00329 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99865 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.47367 * 60.00317 * 9 7 2 11 11 O 1.45206 * 109.47006 * 180.02562 * 9 7 2 12 12 C 1.34706 * 116.99832 * 210.00000 * 11 9 7 13 13 O 1.21471 * 120.00360 * 0.02562 * 12 11 9 14 14 C 1.47733 * 119.99865 * 180.02562 * 12 11 9 15 15 C 1.39628 * 120.14678 * 359.72077 * 14 12 11 16 16 C 1.37949 * 119.84419 * 179.79286 * 15 14 12 17 17 C 1.38367 * 120.14755 * 0.48505 * 16 15 14 18 18 C 1.38369 * 120.30729 * 359.74743 * 17 16 15 19 19 C 1.37949 * 120.14583 * 0.02562 * 18 17 16 20 20 C 1.53000 * 109.47224 * 300.00310 * 9 7 2 21 21 C 1.53002 * 117.49702 * 248.74839 * 20 9 7 22 22 C 1.53000 * 117.49832 * 180.09224 * 20 9 7 23 23 H 0.97002 * 119.99922 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.07694 * 0.02562 * 15 14 12 25 25 H 1.07995 * 119.92451 * 180.23393 * 16 15 14 26 26 H 1.08002 * 119.84724 * 179.72266 * 17 16 15 27 27 H 1.07998 * 119.92816 * 179.97438 * 18 17 16 28 28 H 1.08001 * 120.07235 * 179.97438 * 19 18 17 29 29 H 1.08999 * 115.54857 * 34.41249 * 20 9 7 30 30 H 1.08997 * 117.49959 * 0.02562 * 21 20 9 31 31 H 1.08998 * 117.49994 * 145.02187 * 21 20 9 32 32 H 1.09004 * 117.49736 * 214.97935 * 22 20 9 33 33 H 1.08999 * 117.50060 * 359.97195 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 1 3.8746 -0.6801 0.8911 11 8 3.9955 -2.5631 0.0010 12 6 5.1791 -2.7933 0.6015 13 8 5.7900 -1.8757 1.1118 14 6 5.7343 -4.1618 0.6396 15 6 5.0319 -5.2198 0.0592 16 6 5.5582 -6.4945 0.0946 17 6 6.7742 -6.7274 0.7123 18 6 7.4732 -5.6843 1.2936 19 6 6.9607 -4.4039 1.2614 20 6 4.0220 -0.4730 -1.2480 21 6 4.7217 -1.3176 -2.3148 22 6 5.5371 -0.3681 -1.4336 23 1 -0.4850 0.8401 -0.0004 24 1 4.0807 -5.0400 -0.4196 25 1 5.0178 -7.3132 -0.3572 26 1 7.1796 -7.7281 0.7411 27 1 8.4216 -5.8731 1.7745 28 1 7.5071 -3.5907 1.7159 29 1 3.4140 0.3651 -1.5886 30 1 4.8180 -2.3869 -2.1269 31 1 4.5744 -1.0349 -3.3571 32 1 5.9259 0.5390 -1.8965 33 1 6.1702 -0.8123 -0.6655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:17 Heat of formation + Delta-G solvation = -29.661255 kcal Electronic energy + Delta-G solvation = -17568.496403 eV Core-core repulsion = 14753.404480 eV Total energy + Delta-G solvation = -2815.091923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18611 -38.66484 -36.67780 -34.99096 -32.77000 -31.32874 -30.96469 -28.68230 -24.37094 -22.78829 -22.46400 -21.76715 -20.89649 -19.47933 -17.81240 -16.70818 -16.52744 -16.08164 -15.68737 -14.95660 -14.55378 -14.28443 -13.80101 -13.48785 -13.30781 -12.80306 -12.57686 -12.07654 -11.81774 -11.60800 -11.37525 -11.10269 -10.95259 -10.76822 -10.22324 -10.07977 -9.85730 -9.63685 -9.33655 -9.02399 -9.00632 -8.82241 -8.68774 -6.24306 -4.26757 0.83241 1.34418 2.93534 3.17300 3.29700 3.36948 3.40156 3.90546 4.26249 4.53167 4.81749 4.88168 4.99845 5.04180 5.23478 5.38652 5.49493 5.54437 5.67819 5.71722 5.81320 5.96319 6.18031 6.21266 6.35059 6.37531 6.43611 6.51341 6.73075 6.77010 6.83624 6.85140 7.27543 7.47175 8.19337 8.54320 8.82437 9.32494 10.87347 Molecular weight = 246.10amu Principal moments of inertia in cm(-1) A = 0.033819 B = 0.006568 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.747563 B = 4262.341687 C = 4530.264647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.226 3.774 10 H 0.053 0.947 11 O -0.332 6.332 12 C 0.496 3.504 13 O -0.514 6.514 14 C -0.116 4.116 15 C -0.062 4.062 16 C -0.135 4.135 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.061 4.061 20 C -0.164 4.164 21 C -0.170 4.170 22 C -0.207 4.207 23 H 0.269 0.731 24 H 0.142 0.858 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.135 0.865 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 -10.103 -0.668 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.557 4.557 8 H 0.106 0.894 9 C 0.172 3.828 10 H 0.070 0.930 11 O -0.248 6.248 12 C 0.341 3.659 13 O -0.406 6.406 14 C -0.117 4.117 15 C -0.080 4.080 16 C -0.153 4.153 17 C -0.113 4.113 18 C -0.154 4.154 19 C -0.079 4.079 20 C -0.183 4.183 21 C -0.207 4.207 22 C -0.244 4.244 23 H 0.080 0.920 24 H 0.160 0.840 25 H 0.147 0.853 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.858 -9.681 -0.530 16.104 hybrid contribution 0.330 1.125 -0.131 1.180 sum 13.189 -8.556 -0.661 15.735 Atomic orbital electron populations 1.69835 1.06009 1.27445 1.49027 1.24704 0.94781 0.98584 0.94116 0.87068 0.80821 0.83585 0.78549 1.19999 1.21455 1.18002 1.20698 0.86651 0.95726 1.52648 0.89356 1.20499 0.94932 0.74399 0.92977 0.92964 1.86569 1.33471 1.35934 1.68789 1.21147 0.80581 0.88707 0.75502 1.90739 1.60256 1.45545 1.44021 1.19397 0.96719 0.91537 1.04040 1.21639 0.99446 0.91760 0.95123 1.21178 0.96402 0.96952 1.00766 1.21384 0.94729 0.99097 0.96063 1.21081 1.00588 0.92419 1.01331 1.21303 0.93650 0.97532 0.95434 1.23426 0.92926 1.02054 0.99872 1.22756 1.04703 0.97628 0.95611 1.23262 0.95670 1.01577 1.03845 0.92039 0.83988 0.85306 0.85727 0.85400 0.84676 0.87376 0.88911 0.89617 0.89911 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.33 5.44 -17.82 -0.10 2.23 16 3 Si 0.87 21.52 24.48 -169.99 -4.16 17.36 16 4 H -0.27 -6.49 6.73 56.52 0.38 -6.11 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 7 C -0.52 -14.78 9.48 -34.44 -0.33 -15.11 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 C 0.23 5.68 2.01 -27.88 -0.06 5.62 16 10 H 0.05 1.40 6.22 -51.93 -0.32 1.08 16 11 O -0.33 -7.52 7.63 -40.51 -0.31 -7.83 16 12 C 0.50 10.09 6.85 34.61 0.24 10.33 16 13 O -0.51 -11.38 13.44 -19.24 -0.26 -11.64 16 14 C -0.12 -1.88 5.87 -104.98 -0.62 -2.49 16 15 C -0.06 -0.87 9.62 -39.17 -0.38 -1.24 16 16 C -0.14 -1.49 10.03 -39.64 -0.40 -1.89 16 17 C -0.09 -0.93 10.04 -39.49 -0.40 -1.33 16 18 C -0.14 -1.45 10.03 -39.64 -0.40 -1.85 16 19 C -0.06 -0.84 9.60 -39.17 -0.38 -1.21 16 20 C -0.16 -3.78 4.45 -90.62 -0.40 -4.18 16 21 C -0.17 -3.33 9.80 -26.69 -0.26 -3.59 16 22 C -0.21 -4.14 9.85 -26.70 -0.26 -4.40 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.14 2.04 7.61 -52.49 -0.40 1.64 16 25 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 28 H 0.14 1.81 7.65 -52.49 -0.40 1.41 16 29 H 0.11 2.59 4.40 -51.93 -0.23 2.36 16 30 H 0.09 1.78 6.91 -51.93 -0.36 1.42 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.10 2.10 5.36 -51.93 -0.28 1.82 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -31.17 277.90 -7.21 -38.38 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.72 Total: 4.38 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.73 Total: -19.12 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.57 Total: -19.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.16 Total: 17.36 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.17 -7.21 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.723 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds