Wall clock time and date at job start Sun Mar 29 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00256 * 2 1 4 4 H 1.48499 * 109.47089 * 270.00173 * 3 2 1 5 5 H 1.48502 * 109.47087 * 30.00243 * 3 2 1 6 6 H 1.48495 * 109.47097 * 150.00174 * 3 2 1 7 7 C 1.37882 * 119.99494 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99521 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46852 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46852 * 180.02562 * 10 9 7 12 12 O 1.21269 * 120.00436 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99672 * 179.97438 * 11 10 9 14 14 C 1.46533 * 124.90615 * 179.97438 * 13 11 10 15 15 C 1.53786 * 105.26824 * 179.97438 * 14 13 11 16 16 C 1.51306 * 104.32944 * 0.07427 * 15 14 13 17 17 C 1.38276 * 131.30311 * 179.97438 * 16 15 14 18 18 C 1.38817 * 118.49125 * 179.97438 * 17 16 15 19 19 C 1.38122 * 118.89025 * 0.02562 * 18 17 16 20 20 N 1.31588 * 121.10894 * 359.97438 * 19 18 17 21 21 C 1.33306 * 122.09006 * 0.02562 * 20 19 18 22 22 H 0.96999 * 120.00204 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47338 * 59.99514 * 9 7 2 24 24 H 1.08997 * 109.47079 * 299.99815 * 9 7 2 25 25 H 1.08991 * 109.47632 * 59.99762 * 10 9 7 26 26 H 1.09006 * 109.46749 * 299.99205 * 10 9 7 27 27 H 1.09002 * 110.30270 * 298.90912 * 14 13 11 28 28 H 1.09006 * 110.30030 * 60.95991 * 14 13 11 29 29 H 1.08992 * 110.44168 * 118.78313 * 15 14 13 30 30 H 1.08999 * 110.44022 * 241.31392 * 15 14 13 31 31 H 1.07997 * 120.75099 * 359.91901 * 17 16 15 32 32 H 1.08007 * 120.55267 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.44673 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4915 -4.9672 -0.0033 12 8 0.2788 -4.9672 -0.0041 13 7 2.1654 -6.1344 -0.0039 14 6 1.5440 -7.4614 -0.0051 15 6 2.7157 -8.4574 -0.0061 16 6 3.9505 -7.5829 -0.0034 17 6 5.2957 -7.9030 -0.0026 18 6 6.2224 -6.8695 -0.0005 19 6 5.7675 -5.5653 0.0010 20 7 4.4797 -5.2945 0.0001 21 6 3.5542 -6.2539 -0.0018 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8880 25 1 2.8711 -3.6049 0.8889 26 1 2.8724 -3.6040 -0.8911 27 1 0.9357 -7.5950 0.8895 28 1 0.9344 -7.5928 -0.8992 29 1 2.6874 -9.0794 0.8885 30 1 2.6882 -9.0766 -0.9027 31 1 5.6179 -8.9338 -0.0025 32 1 7.2814 -7.0816 0.0006 33 1 6.4806 -4.7543 0.0030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527454868.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:10 Heat of formation + Delta-G solvation = 5.110905 kcal Electronic energy + Delta-G solvation = -17213.419189 eV Core-core repulsion = 14432.127852 eV Total energy + Delta-G solvation = -2781.291338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28294 -38.91766 -36.63462 -33.60681 -33.20758 -31.00987 -30.46507 -29.43020 -25.86207 -24.05062 -23.53728 -22.22657 -20.81878 -19.57243 -17.20963 -16.65344 -16.42294 -15.99041 -15.85418 -14.95970 -14.43412 -14.37364 -13.98750 -13.59192 -13.20447 -12.97335 -12.61597 -12.60561 -12.09707 -11.92795 -11.83048 -11.09504 -10.87052 -10.54032 -10.39387 -9.87015 -9.71223 -9.69055 -9.45297 -9.10594 -9.00536 -8.26173 -7.98038 -5.89976 -3.93127 1.03079 1.21454 2.71408 3.01874 3.38283 3.43768 3.47561 3.81814 4.19172 4.28940 4.51582 4.57479 4.75114 4.89600 4.91330 5.16520 5.39443 5.45100 5.45198 5.60620 5.69254 5.70169 5.89743 6.06056 6.18202 6.43706 6.53361 6.58441 6.98187 7.54083 7.81030 7.91239 7.97106 8.12544 8.38193 8.54495 9.14625 9.69739 11.21376 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.005758 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.028899 B = 4861.348025 C = 5784.207435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.034 3.966 10 C -0.112 4.112 11 C 0.525 3.475 12 O -0.508 6.508 13 N -0.554 5.554 14 C 0.105 3.895 15 C -0.080 4.080 16 C -0.196 4.196 17 C -0.033 4.033 18 C -0.211 4.211 19 C 0.143 3.857 20 N -0.499 5.499 21 C 0.367 3.633 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.804 -18.931 0.000 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.151 4.151 11 C 0.317 3.683 12 O -0.380 6.380 13 N -0.281 5.281 14 C -0.017 4.017 15 C -0.117 4.117 16 C -0.202 4.202 17 C -0.059 4.059 18 C -0.233 4.233 19 C -0.016 4.016 20 N -0.214 5.214 21 C 0.137 3.863 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 10.468 -17.819 0.005 20.666 hybrid contribution 0.754 0.017 -0.011 0.755 sum 11.222 -17.802 -0.006 21.044 Atomic orbital electron populations 1.70004 1.06063 1.26482 1.50627 1.25027 0.94818 0.99200 0.95420 0.86575 0.79805 0.83459 0.78032 1.20707 1.21296 1.19836 1.21211 0.93085 0.90751 1.50796 0.92376 1.18988 0.93241 0.89815 0.98334 1.21886 0.99885 0.89415 1.03942 1.22101 0.88290 0.84781 0.73079 1.90687 1.14096 1.86840 1.46328 1.46383 1.03095 1.07956 1.70674 1.22046 0.95793 0.80061 1.03815 1.21067 0.89964 0.96907 1.03787 1.20742 0.95392 0.94794 1.09303 1.20765 0.90451 0.99958 0.94704 1.21955 1.00610 0.93777 1.06913 1.22566 0.90381 0.96070 0.92543 1.67126 1.01536 1.36158 1.16532 1.18811 0.85227 0.89613 0.92620 0.93045 0.96023 0.96017 0.89277 0.89297 0.89719 0.89695 0.89081 0.89075 0.84863 0.84508 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.16 13.29 55.43 0.74 -27.42 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.11 -2.57 3.97 -27.88 -0.11 -2.68 16 11 C 0.52 11.30 7.80 -10.98 -0.09 11.21 16 12 O -0.51 -12.43 16.27 5.57 0.09 -12.34 16 13 N -0.55 -9.48 3.12 -114.76 -0.36 -9.84 16 14 C 0.10 1.32 7.05 -3.62 -0.03 1.30 16 15 C -0.08 -0.73 6.96 -27.18 -0.19 -0.92 16 16 C -0.20 -2.30 6.26 -104.15 -0.65 -2.95 16 17 C -0.03 -0.30 10.16 -39.35 -0.40 -0.70 16 18 C -0.21 -1.94 10.13 -39.41 -0.40 -2.34 16 19 C 0.14 1.69 11.16 -17.70 -0.20 1.49 16 20 N -0.50 -7.92 8.06 -12.32 -0.10 -8.02 16 21 C 0.37 5.70 7.46 -154.03 -1.15 4.55 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 24 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.09 2.01 7.68 -51.93 -0.40 1.61 16 26 H 0.09 2.00 7.68 -51.93 -0.40 1.60 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -35.74 285.71 -8.22 -43.97 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.14 Total: -3.60 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.74 Total: -4.31 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.28 Total: -45.28 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.74 -8.22 -43.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527454868.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.078 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds