Wall clock time and date at job start Sun Mar 29 2020 22:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37989 * 120.51616 * 2 1 4 4 N 1.31897 * 120.92668 * 179.97438 * 3 2 1 5 5 C 1.31923 * 122.11986 * 359.97438 * 4 3 2 6 6 C 1.37945 * 120.93217 * 359.97438 * 5 4 3 7 7 C 1.40171 * 120.51933 * 179.97438 * 2 1 3 8 8 C 1.47309 * 120.95431 * 0.02786 * 7 2 1 9 9 C 1.34844 * 119.99925 * 179.97438 * 8 7 2 10 10 C 1.46419 * 119.99943 * 179.97438 * 9 8 7 11 11 O 1.21732 * 119.99761 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00059 * 179.97438 * 10 9 8 13 13 C 1.46507 * 120.00005 * 0.02562 * 12 10 9 14 14 C 1.36635 * 120.00321 * 179.97438 * 12 10 9 15 15 H 1.08004 * 119.99357 * 23.35178 * 14 12 10 16 16 C 1.39180 * 120.00315 * 203.35750 * 14 12 10 17 17 N 1.31285 * 120.00234 * 16.46403 * 16 14 12 18 18 Si 1.86799 * 120.00103 * 196.46320 * 16 14 12 19 19 H 1.48507 * 109.46777 * 59.99974 * 18 16 14 20 20 H 1.48502 * 109.47039 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47234 * 300.00221 * 18 16 14 22 22 H 1.08998 * 109.46988 * 90.00564 * 1 2 3 23 23 H 1.08998 * 109.47053 * 210.00279 * 1 2 3 24 24 H 1.08998 * 109.47209 * 330.00004 * 1 2 3 25 25 H 1.07998 * 119.53918 * 0.25522 * 3 2 1 26 26 H 1.08002 * 119.53094 * 180.02562 * 5 4 3 27 27 H 1.07997 * 120.51455 * 180.02562 * 6 5 4 28 28 H 1.07995 * 120.00182 * 359.97438 * 8 7 2 29 29 H 1.07997 * 119.99935 * 359.97438 * 9 8 7 30 30 H 1.08998 * 109.47071 * 84.80911 * 13 12 10 31 31 H 1.08995 * 109.46961 * 204.80893 * 13 12 10 32 32 H 1.09000 * 109.46659 * 324.81221 * 13 12 10 33 33 H 0.96991 * 120.00461 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1888 0.0000 4 7 3.5266 1.1982 0.0005 5 6 4.2360 0.0860 0.0015 6 6 3.6197 -1.1482 0.0027 7 6 2.2188 -1.2075 0.0005 8 6 1.5154 -2.5018 0.0005 9 6 2.2194 -3.6518 0.0005 10 6 1.5202 -4.9383 0.0010 11 8 0.3032 -4.9695 0.0010 12 7 2.2238 -6.0877 0.0005 13 6 3.6884 -6.0500 0.0000 14 6 1.5713 -7.2882 0.0015 15 1 0.5586 -7.3526 -0.3681 16 6 2.2118 -8.4280 0.4790 17 7 3.2928 -8.3139 1.2151 18 14 1.5331 -10.1202 0.0724 19 1 1.5192 -10.3070 -1.4008 20 1 2.3912 -11.1602 0.6946 21 1 0.1499 -10.2385 0.5994 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6686 2.1246 0.0042 26 1 5.3146 0.1425 0.0023 27 1 4.2071 -2.0544 0.0039 28 1 0.4358 -2.5296 0.0005 29 1 3.2990 -3.6240 0.0001 30 1 4.0496 -5.9480 1.0233 31 1 4.0754 -6.9731 -0.4315 32 1 4.0297 -5.2010 -0.5922 33 1 3.7393 -9.1081 1.5475 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544608531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:46 Heat of formation + Delta-G solvation = 20.638882 kcal Electronic energy + Delta-G solvation = -16814.170619 eV Core-core repulsion = 14033.552625 eV Total energy + Delta-G solvation = -2780.617994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11945 -38.49021 -35.10397 -34.37606 -32.83417 -31.80608 -30.16088 -27.25142 -26.53917 -25.25014 -23.92753 -22.07897 -20.80894 -18.36219 -17.29288 -16.89837 -16.13529 -15.66996 -14.99521 -14.71322 -14.31623 -14.16368 -13.93174 -13.33328 -13.04582 -12.88110 -12.69672 -12.40004 -11.96512 -11.70647 -11.48121 -11.43046 -11.05909 -10.82798 -10.58117 -10.49519 -10.37378 -9.41673 -9.16019 -8.92600 -8.51481 -8.26827 -7.81458 -6.53421 -3.96456 0.75556 1.18598 2.44769 3.13711 3.16304 3.20160 3.90665 4.00771 4.33136 4.48097 4.60891 4.81027 4.92929 5.01324 5.05090 5.11742 5.36071 5.55823 5.62762 5.68170 5.80516 5.93025 6.02124 6.06846 6.21992 6.32760 6.67810 6.76139 6.82247 6.89474 7.02849 7.39033 8.00196 8.02406 8.34710 9.04866 9.25452 9.89248 10.50634 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045730 B = 0.004636 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.146798 B = 6037.994735 C = 6571.623462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C 0.096 3.904 4 N -0.495 5.495 5 C 0.092 3.908 6 C -0.169 4.169 7 C 0.001 3.999 8 C -0.107 4.107 9 C -0.131 4.131 10 C 0.452 3.548 11 O -0.597 6.597 12 N -0.423 5.423 13 C 0.104 3.896 14 C -0.302 4.302 15 H 0.103 0.897 16 C 0.032 3.968 17 N -0.865 5.865 18 Si 0.929 3.071 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.270 1.270 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 11.627 -2.179 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C -0.061 4.061 4 N -0.204 5.204 5 C -0.064 4.064 6 C -0.189 4.189 7 C -0.007 4.007 8 C -0.129 4.129 9 C -0.153 4.153 10 C 0.243 3.757 11 O -0.484 6.484 12 N -0.139 5.139 13 C -0.040 4.040 14 C -0.431 4.431 15 H 0.121 0.879 16 C -0.174 4.174 17 N -0.502 5.502 18 Si 0.755 3.245 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.195 1.195 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.171 0.829 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.356 12.208 -2.074 12.605 hybrid contribution -0.334 -1.754 -0.017 1.785 sum 2.023 10.454 -2.091 10.851 Atomic orbital electron populations 1.20763 0.90163 1.03358 1.02783 1.21088 0.97585 0.93258 1.01531 1.22503 0.89908 0.97125 0.96560 1.67556 1.08177 1.31785 1.12836 1.22576 1.00114 0.87579 0.96163 1.22412 0.94534 0.99772 1.02144 1.19395 0.92948 0.93346 0.94987 1.22011 1.00329 0.89294 1.01231 1.23461 0.99845 0.93832 0.98194 1.17935 0.87525 0.83837 0.86373 1.90632 1.13372 1.87059 1.57363 1.43557 1.05592 1.05170 1.59577 1.21598 0.81247 1.00322 1.00828 1.19726 1.00804 0.83411 1.39118 0.87907 1.25461 0.96507 1.00606 0.94790 1.69946 1.19466 1.30950 1.29887 0.85941 0.79091 0.80406 0.79043 1.19635 1.20737 1.19485 0.90781 0.90525 0.91337 0.83076 0.82923 0.84498 0.84582 0.86361 0.92644 0.90520 0.95006 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.59 36.01 0.35 -0.90 16 2 C -0.13 -1.75 5.94 -103.99 -0.62 -2.37 16 3 C 0.10 1.20 10.85 -17.61 -0.19 1.01 16 4 N -0.49 -6.81 10.34 -13.35 -0.14 -6.95 16 5 C 0.09 1.16 11.17 -17.62 -0.20 0.96 16 6 C -0.17 -2.28 9.49 -38.95 -0.37 -2.65 16 7 C 0.00 0.02 5.90 -104.74 -0.62 -0.60 16 8 C -0.11 -1.87 8.94 -37.10 -0.33 -2.20 16 9 C -0.13 -2.53 8.62 -37.49 -0.32 -2.85 16 10 C 0.45 11.19 7.56 -12.97 -0.10 11.09 16 11 O -0.60 -16.77 15.93 5.16 0.08 -16.69 16 12 N -0.42 -10.78 3.00 -123.80 -0.37 -11.15 16 13 C 0.10 2.24 8.30 59.85 0.50 2.73 16 14 C -0.30 -8.28 9.23 -15.06 -0.14 -8.42 16 15 H 0.10 2.94 7.44 -52.48 -0.39 2.55 16 16 C 0.03 0.82 4.95 -17.44 -0.09 0.73 16 17 N -0.87 -22.29 10.99 55.51 0.61 -21.68 16 18 Si 0.93 19.95 29.59 -169.99 -5.03 14.92 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.08 0.92 6.45 -51.93 -0.34 0.58 16 24 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 25 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.14 1.65 6.30 -52.49 -0.33 1.32 16 28 H 0.14 2.47 5.96 -52.49 -0.31 2.16 16 29 H 0.12 1.95 4.43 -52.49 -0.23 1.72 16 30 H 0.05 1.21 7.88 -51.93 -0.41 0.80 16 31 H 0.08 1.72 6.76 -51.93 -0.35 1.37 16 32 H 0.03 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -31.17 284.01 -6.21 -37.38 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.52 Total: 3.33 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.13 Total: -3.46 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.10 Total: -39.77 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.08 Total: -16.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.17 -6.21 -37.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544608531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.022 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds