Wall clock time and date at job start Sun Mar 29 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86796 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47157 * 239.99555 * 3 2 1 5 5 H 1.48498 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47350 * 119.99721 * 3 2 1 7 7 C 1.39933 * 120.00138 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00000 * 196.79923 * 7 2 1 9 9 C 1.41406 * 119.99732 * 16.79964 * 7 2 1 10 10 C 1.40785 * 120.21213 * 25.15306 * 9 7 2 11 11 C 1.37644 * 119.88355 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.32333 * 359.74225 * 11 10 9 13 13 C 1.39243 * 120.42715 * 0.51424 * 12 11 10 14 14 N 1.39945 * 119.94503 * 179.76470 * 13 12 11 15 15 C 1.34777 * 119.99714 * 325.53397 * 14 13 12 16 16 O 1.21283 * 119.99989 * 354.89495 * 15 14 13 17 17 C 1.50700 * 119.99611 * 175.17050 * 15 14 13 18 18 H 1.08996 * 115.54846 * 325.44815 * 17 15 14 19 19 C 1.52997 * 117.49823 * 111.11843 * 17 15 14 20 20 C 1.52994 * 60.00086 * 107.48856 * 19 17 15 21 21 H 1.09000 * 117.50015 * 107.48946 * 20 19 17 22 22 N 1.46905 * 117.49791 * 252.51058 * 20 19 17 23 23 C 1.38277 * 120.10799 * 359.48825 * 13 12 11 24 24 H 0.97004 * 120.00155 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05028 * 0.03886 * 10 9 7 26 26 H 1.08001 * 119.83497 * 180.02562 * 11 10 9 27 27 H 1.07999 * 119.77931 * 180.28209 * 12 11 10 28 28 H 0.96994 * 120.00044 * 145.53294 * 14 13 12 29 29 H 1.09000 * 117.49855 * 214.97962 * 19 17 15 30 30 H 1.09004 * 117.49955 * 359.97100 * 19 17 15 31 31 H 1.00900 * 110.99719 * 248.62553 * 22 20 19 32 32 H 1.00899 * 110.99804 * 12.57649 * 22 20 19 33 33 H 1.07999 * 120.16321 * 180.27279 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0533 -1.2316 0.2709 9 6 1.3462 -2.4105 -0.3529 10 6 0.2107 -2.3741 -1.1844 11 6 -0.4286 -3.5449 -1.5237 12 6 0.0429 -4.7604 -1.0553 13 6 1.1617 -4.8113 -0.2278 14 7 1.6264 -6.0443 0.2436 15 6 0.7522 -7.0299 0.5276 16 8 -0.4405 -6.8197 0.4638 17 6 1.2569 -8.3915 0.9307 18 1 2.1808 -8.7119 0.4492 19 6 1.0252 -8.8309 2.3778 20 6 0.2147 -9.4662 1.2464 21 1 0.4527 -10.4940 0.9724 22 7 -1.2013 -9.0919 1.1333 23 6 1.8176 -3.6460 0.1242 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1579 -1.4292 -1.5555 26 1 -1.2993 -3.5162 -2.1620 27 1 -0.4628 -5.6741 -1.3308 28 1 2.5776 -6.1894 0.3658 29 1 1.7965 -9.4407 2.8482 30 1 0.5082 -8.1349 3.0385 31 1 -1.8006 -9.8706 1.3624 32 1 -1.4111 -8.2919 1.7114 33 1 2.6880 -3.6848 0.7624 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:47 Heat of formation + Delta-G solvation = -6.828927 kcal Electronic energy + Delta-G solvation = -16986.547556 eV Core-core repulsion = 14204.738469 eV Total energy + Delta-G solvation = -2781.809088 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.33492 -39.34981 -37.67425 -36.00014 -34.82622 -31.96293 -31.77132 -30.04082 -27.19704 -25.46445 -22.95862 -22.76059 -22.19004 -20.75236 -19.37386 -18.39749 -17.47511 -17.06272 -16.61771 -16.54636 -15.84207 -15.54493 -14.94495 -14.75387 -14.40073 -14.19548 -14.02724 -13.52498 -13.04881 -12.97361 -12.90415 -12.70380 -12.41606 -12.23311 -11.93830 -11.45098 -11.32968 -11.08461 -10.87700 -10.50632 -9.42272 -9.26161 -8.74510 -8.59100 -6.36196 0.88217 0.97597 1.39783 1.51129 1.53809 1.78105 2.20518 2.29882 2.74499 2.93606 3.45345 3.71847 3.86120 3.91463 4.01400 4.29240 4.43934 4.67659 4.83980 4.87365 5.00925 5.03937 5.05278 5.14875 5.24710 5.34915 5.76572 5.86394 6.08054 6.12097 6.24145 6.32497 6.63179 6.67104 6.78084 6.92649 6.99673 7.42036 8.35008 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.047816 B = 0.004750 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.442341 B = 5893.420158 C = 6166.024003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.498 4.498 8 H 0.081 0.919 9 C 0.095 3.905 10 C -0.196 4.196 11 C -0.098 4.098 12 C -0.239 4.239 13 C 0.166 3.834 14 N -0.663 5.663 15 C 0.525 3.475 16 O -0.542 6.542 17 C -0.201 4.201 18 H 0.154 0.846 19 C -0.180 4.180 20 C 0.072 3.928 21 H 0.158 0.842 22 N -0.821 5.821 23 C -0.258 4.258 24 H 0.288 0.712 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.417 0.583 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.352 0.648 32 H 0.346 0.654 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 -13.717 3.724 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.092 3.908 10 C -0.216 4.216 11 C -0.117 4.117 12 C -0.260 4.260 13 C 0.072 3.928 14 N -0.308 5.308 15 C 0.314 3.686 16 O -0.418 6.418 17 C -0.223 4.223 18 H 0.172 0.828 19 C -0.220 4.220 20 C -0.042 4.042 21 H 0.175 0.825 22 N -0.352 5.352 23 C -0.280 4.280 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.254 0.746 29 H 0.156 0.844 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.635 -13.357 2.927 14.148 hybrid contribution 0.455 0.852 0.938 1.346 sum 4.090 -12.504 3.864 13.712 Atomic orbital electron populations 1.69900 1.09204 1.30655 1.35605 1.26820 0.95464 1.04710 0.91080 0.85197 0.78677 0.75323 0.80152 1.18302 1.19386 1.18201 1.19795 0.98119 0.92033 1.42817 0.90081 1.17762 0.91542 0.92682 0.88784 1.21299 1.00465 0.96781 1.03076 1.20806 0.98710 0.92680 0.99511 1.20424 1.01830 0.96946 1.06784 1.17482 0.95813 0.84724 0.94752 1.43488 1.11048 1.11178 1.65135 1.20581 0.85967 0.85943 0.76141 1.90682 1.17140 1.82457 1.51563 1.22627 1.04609 0.92005 1.03048 0.82817 1.23750 1.05422 1.03765 0.89108 1.22528 0.86361 0.96498 0.98781 0.82493 1.58271 1.02756 1.10669 1.63480 1.20872 1.06381 0.91387 1.09364 0.90135 0.87810 0.87480 0.88146 0.74624 0.84403 0.90200 0.83333 0.83841 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.61 10.94 21.82 0.24 -44.37 16 2 C 0.03 1.74 5.16 85.25 0.44 2.18 16 3 Si 0.99 38.40 29.59 68.60 2.03 40.43 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.50 -27.17 9.05 23.46 0.21 -26.95 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.10 5.31 5.57 -21.30 -0.12 5.20 16 10 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 11 C -0.10 -5.08 10.02 22.20 0.22 -4.85 16 12 C -0.24 -11.97 8.66 22.58 0.20 -11.77 16 13 C 0.17 7.77 6.25 38.10 0.24 8.01 16 14 N -0.66 -23.88 5.33 -303.66 -1.62 -25.50 16 15 C 0.52 18.23 7.34 87.66 0.64 18.87 16 16 O -0.54 -23.32 11.71 -3.04 -0.04 -23.36 16 17 C -0.20 -4.47 6.19 -11.54 -0.07 -4.54 16 18 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 19 C -0.18 -3.15 9.93 30.59 0.30 -2.85 16 20 C 0.07 1.37 7.20 44.91 0.32 1.70 16 21 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 22 N -0.82 -20.04 8.48 -168.68 -1.43 -21.47 16 23 C -0.26 -12.96 9.70 22.85 0.22 -12.74 16 24 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 25 H 0.10 5.98 6.17 -2.91 -0.02 5.96 16 26 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 27 H 0.10 5.03 6.48 -2.91 -0.02 5.01 16 28 H 0.42 11.65 8.82 -92.71 -0.82 10.84 16 29 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 31 H 0.35 6.31 9.08 -89.69 -0.81 5.49 16 32 H 0.35 9.89 7.29 -89.69 -0.65 9.24 16 33 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -69.58 283.78 0.87 -68.71 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -1.12 Total: 44.08 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.81 Total: -38.51 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -2.81 Total: -91.35 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -69.58 0.87 -68.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.882 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds