Wall clock time and date at job start Sun Mar 29 2020 22:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38017 * 120.51828 * 2 1 4 4 N 1.31874 * 120.92280 * 179.97438 * 3 2 1 5 5 C 1.31896 * 122.11541 * 0.02562 * 4 3 2 6 6 C 1.37979 * 120.92659 * 359.97438 * 5 4 3 7 7 C 1.40118 * 120.51324 * 179.97438 * 2 1 3 8 8 C 1.47399 * 120.95346 * 0.05558 * 7 2 1 9 9 C 1.34633 * 120.00388 * 179.97438 * 8 7 2 10 10 C 1.46651 * 120.00358 * 179.97438 * 9 8 7 11 11 O 1.21673 * 119.99844 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00361 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00214 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.46895 * 179.97438 * 13 12 10 15 15 H 1.07996 * 120.00596 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99870 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00516 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99928 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46972 * 90.00148 * 18 16 14 20 20 H 1.48500 * 109.47256 * 209.99699 * 18 16 14 21 21 H 1.48498 * 109.47003 * 330.00115 * 18 16 14 22 22 H 1.08997 * 109.46453 * 90.00236 * 1 2 3 23 23 H 1.08993 * 109.47151 * 210.00217 * 1 2 3 24 24 H 1.09004 * 109.47034 * 330.00404 * 1 2 3 25 25 H 1.08003 * 119.53984 * 0.25559 * 3 2 1 26 26 H 1.07995 * 119.53357 * 180.02562 * 5 4 3 27 27 H 1.07994 * 120.51566 * 180.02562 * 6 5 4 28 28 H 1.08003 * 119.99680 * 359.96715 * 8 7 2 29 29 H 1.08003 * 119.99937 * 359.97438 * 9 8 7 30 30 H 0.97003 * 119.99693 * 359.97438 * 12 10 9 31 31 H 1.08995 * 109.46547 * 299.99980 * 13 12 10 32 32 H 1.08992 * 109.46848 * 59.99926 * 13 12 10 33 33 H 0.97001 * 120.00804 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1890 0.0000 4 7 3.5266 1.1983 0.0005 5 6 4.2357 0.0861 0.0005 6 6 3.6189 -1.1481 0.0006 7 6 2.2185 -1.2071 0.0005 8 6 1.5144 -2.5021 -0.0001 9 6 2.2171 -3.6505 -0.0001 10 6 1.5166 -4.9389 -0.0002 11 8 0.3003 -4.9700 -0.0007 12 7 2.2200 -6.0884 -0.0007 13 6 1.5202 -7.3755 -0.0013 14 6 2.5285 -8.4955 -0.0024 15 1 3.5849 -8.2711 -0.0022 16 6 2.1023 -9.8067 -0.0027 17 7 2.9821 -10.7842 -0.0041 18 14 0.2750 -10.1949 -0.0023 19 1 -0.2095 -10.2975 -1.4023 20 1 0.0429 -11.4840 0.6974 21 1 -0.4609 -9.1119 0.6982 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8901 0.5138 25 1 1.6688 2.1248 0.0042 26 1 5.3142 0.1424 0.0014 27 1 4.2060 -2.0545 0.0010 28 1 0.4347 -2.5297 -0.0005 29 1 3.2968 -3.6229 0.0000 30 1 3.1897 -6.0636 -0.0014 31 1 0.8952 -7.4496 0.8886 32 1 0.8953 -7.4488 -0.8913 33 1 2.6823 -11.7067 -0.0039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618220052.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:49 Heat of formation + Delta-G solvation = 4.235679 kcal Electronic energy + Delta-G solvation = -16241.736906 eV Core-core repulsion = 13460.407616 eV Total energy + Delta-G solvation = -2781.329290 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46962 -39.01228 -35.17878 -34.33224 -33.19388 -32.39813 -30.73086 -28.20054 -27.41482 -25.01406 -22.86107 -22.02071 -20.79443 -19.50524 -17.85444 -16.82551 -16.59223 -15.83552 -15.33438 -15.07481 -14.66723 -14.45048 -14.22764 -13.62657 -13.45486 -13.25191 -12.97521 -12.81923 -12.40048 -12.30302 -12.00499 -11.44988 -11.06053 -11.02810 -10.79583 -10.01428 -9.71536 -9.55504 -9.43914 -9.23057 -8.84389 -8.77981 -8.19938 -6.25169 -4.28047 0.34215 0.88674 1.99141 3.23886 3.30863 3.38680 3.54195 3.78916 3.82483 4.20626 4.29897 4.47010 4.55036 4.60264 4.74590 4.95786 5.10062 5.22472 5.30859 5.36197 5.45059 5.55725 5.65112 5.72825 5.92333 6.24271 6.36189 6.45501 6.76198 7.01021 7.13222 7.32717 7.73561 8.07068 8.43769 8.69174 8.82788 9.34349 10.86690 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.047355 B = 0.003825 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.140506 B = 7318.059644 C = 7888.754404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 C 0.096 3.904 4 N -0.485 5.485 5 C 0.092 3.908 6 C -0.158 4.158 7 C -0.018 4.018 8 C -0.060 4.060 9 C -0.166 4.166 10 C 0.526 3.474 11 O -0.559 6.559 12 N -0.695 5.695 13 C 0.219 3.781 14 C -0.546 4.546 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.585 21.035 0.025 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.124 4.124 3 C -0.060 4.060 4 N -0.193 5.193 5 C -0.064 4.064 6 C -0.178 4.178 7 C -0.026 4.026 8 C -0.080 4.080 9 C -0.188 4.188 10 C 0.313 3.687 11 O -0.441 6.441 12 N -0.342 5.342 13 C 0.097 3.903 14 C -0.584 4.584 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.173 0.827 26 H 0.175 0.825 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.232 0.768 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.963 21.547 0.029 21.568 hybrid contribution -0.660 -1.267 -0.031 1.429 sum -1.623 20.280 -0.002 20.345 Atomic orbital electron populations 1.20813 0.89898 1.03619 1.03083 1.21142 0.97721 0.93231 1.00258 1.22592 0.89872 0.97282 0.96299 1.67571 1.08217 1.31859 1.11683 1.22662 1.00392 0.87438 0.95922 1.22459 0.94325 1.00053 1.00951 1.19325 0.93135 0.93082 0.97083 1.22234 1.00691 0.89627 0.95456 1.23290 1.00557 0.93003 1.01904 1.18343 0.87488 0.84657 0.78193 1.90760 1.13663 1.88034 1.51612 1.46134 1.10420 1.06464 1.71188 1.19542 0.93818 0.80018 0.96961 1.21080 0.94195 0.89536 1.53549 0.90192 1.24796 0.98095 0.95902 0.93800 1.69875 1.34042 0.99677 1.49259 0.86814 0.85372 0.78405 0.79088 1.19802 1.20837 1.18497 0.90447 0.90548 0.90939 0.82708 0.82546 0.84153 0.84069 0.85360 0.76773 0.95478 0.95938 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.59 36.01 0.35 -0.57 16 2 C -0.12 -1.21 5.94 -104.00 -0.62 -1.83 16 3 C 0.10 0.94 10.85 -17.61 -0.19 0.75 16 4 N -0.48 -5.41 10.34 -13.35 -0.14 -5.55 16 5 C 0.09 0.90 11.17 -17.62 -0.20 0.71 16 6 C -0.16 -1.58 9.49 -38.95 -0.37 -1.95 16 7 C -0.02 -0.20 5.90 -104.74 -0.62 -0.82 16 8 C -0.06 -0.76 8.94 -37.13 -0.33 -1.09 16 9 C -0.17 -2.27 9.44 -37.46 -0.35 -2.62 16 10 C 0.53 9.89 7.75 -12.87 -0.10 9.79 16 11 O -0.56 -12.49 16.23 5.21 0.08 -12.41 16 12 N -0.69 -13.84 5.54 -62.82 -0.35 -14.19 16 13 C 0.22 5.32 4.50 -5.19 -0.02 5.30 16 14 C -0.55 -14.81 9.83 -34.44 -0.34 -15.15 16 15 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 18 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.65 6.45 -51.93 -0.34 0.31 16 24 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 26 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.14 1.14 6.30 -52.49 -0.33 0.81 16 28 H 0.14 1.85 5.96 -52.48 -0.31 1.54 16 29 H 0.13 1.36 6.17 -52.48 -0.32 1.04 16 30 H 0.40 6.87 8.30 -40.82 -0.34 6.53 16 31 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 32 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 33 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 289.61 15.07 4.36 4.36 Total: -1.00 -32.81 289.61 -6.50 -39.31 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.68 Total: 2.82 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.89 Total: -5.41 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.29 Total: -45.22 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.41 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.81 -6.50 -39.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618220052.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.543 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds