Wall clock time and date at job start Sun Mar 29 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47161 * 215.60608 * 3 2 1 5 5 N 1.46506 * 109.46919 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99925 * 269.99853 * 5 4 3 7 7 C 1.50697 * 109.47340 * 270.00235 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99650 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99850 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47480 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46674 * 119.99891 * 11 9 7 14 14 H 1.48493 * 109.47147 * 239.99972 * 11 9 7 15 15 C 1.34777 * 119.99880 * 90.00602 * 5 4 3 16 16 O 1.21613 * 119.99966 * 179.97438 * 15 5 4 17 17 C 1.43207 * 119.99984 * 0.27148 * 15 5 4 18 18 C 4.66653 * 127.14756 * 148.60550 * 2 1 3 19 19 C 5.34261 * 112.93550 * 142.86204 * 2 1 3 20 20 C 1.52996 * 117.49849 * 67.80466 * 19 18 17 21 21 C 1.52999 * 117.50110 * 359.14272 * 19 18 17 22 22 H 1.09010 * 109.46958 * 95.60748 * 3 2 1 23 23 H 1.09001 * 109.47013 * 335.60987 * 3 2 1 24 24 H 1.08997 * 109.46785 * 60.00078 * 4 3 2 25 25 H 1.09001 * 109.47466 * 300.00101 * 4 3 2 26 26 H 1.08994 * 109.47013 * 30.00340 * 6 5 4 27 27 H 1.08996 * 109.46772 * 150.00235 * 6 5 4 28 28 H 0.97004 * 119.99666 * 180.02562 * 10 9 7 29 29 H 1.09006 * 115.54513 * 213.47418 * 19 18 17 30 30 H 1.08998 * 117.49944 * 0.02562 * 20 19 18 31 31 H 1.09008 * 117.49634 * 145.01839 * 20 19 18 32 32 H 1.08994 * 117.49923 * 214.98032 * 21 19 18 33 33 H 1.09000 * 117.49171 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1737 0.8398 5 7 4.5825 1.1746 0.8393 6 6 5.3159 0.4363 1.8705 7 6 5.5668 1.3382 3.0514 8 1 5.2149 2.3591 3.0357 9 6 6.2458 0.8599 4.1521 10 7 6.6739 -0.3834 4.1714 11 14 6.5575 1.9781 5.6156 12 1 5.9784 3.3188 5.3466 13 1 5.9211 1.3984 6.8257 14 1 8.0200 2.1058 5.8383 15 6 5.2556 1.8549 -0.1098 16 8 6.4717 1.8561 -0.1100 17 6 4.5387 2.5815 -1.1142 18 6 3.9540 3.1751 -1.9377 19 6 3.2180 3.9223 -2.9705 20 6 3.8487 4.0125 -4.3615 21 6 3.8216 5.2433 -3.4518 22 1 2.9713 0.1012 -1.0229 23 1 2.9717 -0.9351 0.4244 24 1 2.7542 1.0731 1.8625 25 1 2.7537 2.1095 0.4154 26 1 4.7275 -0.4241 2.1889 27 1 6.2683 0.0952 1.4649 28 1 7.1512 -0.7199 4.9459 29 1 2.1314 3.8565 -2.9138 30 1 4.8085 3.5182 -4.5120 31 1 3.1771 4.0064 -5.2200 32 1 3.1321 6.0464 -3.7121 33 1 4.7634 5.5592 -3.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625385402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:31 Heat of formation + Delta-G solvation = 67.147191 kcal Electronic energy + Delta-G solvation = -16534.582893 eV Core-core repulsion = 13755.981650 eV Total energy + Delta-G solvation = -2778.601242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24610 -37.68274 -36.84677 -35.27786 -33.07858 -32.33845 -30.88080 -27.63584 -24.87280 -23.97730 -22.91948 -22.65097 -20.30366 -17.81376 -17.22992 -16.61185 -16.49890 -15.82627 -15.10640 -14.72101 -14.49308 -14.34731 -13.68078 -13.21035 -12.74471 -12.49763 -12.40884 -12.30552 -11.97032 -11.80692 -11.69127 -11.43712 -11.25726 -10.98158 -10.88412 -10.68299 -10.27113 -10.08826 -9.76907 -9.66026 -9.45163 -8.49871 -7.94420 -6.11523 -4.16287 1.84223 2.51786 2.76640 2.83243 3.27773 3.35693 3.38255 3.47496 3.52794 3.95955 4.15172 4.38321 4.47910 4.57845 4.78124 4.86359 5.06687 5.17944 5.23863 5.36952 5.43149 5.50011 5.65198 5.81732 5.84807 5.85773 6.07988 6.87006 7.26756 7.33608 7.44091 7.58949 7.84584 8.10866 8.13681 8.71614 8.90501 9.49380 10.96738 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.005969 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.105600 B = 4689.674425 C = 5700.247538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.219 3.781 3 C -0.049 4.049 4 C 0.118 3.882 5 N -0.583 5.583 6 C 0.244 3.756 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.618 3.382 16 O -0.516 6.516 17 C -0.186 4.186 18 C -0.092 4.092 19 C -0.057 4.057 20 C -0.162 4.162 21 C -0.163 4.163 22 H 0.106 0.894 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.264 0.736 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 5.394 -12.966 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.099 4.099 3 C -0.091 4.091 4 C -0.008 4.008 5 N -0.313 5.313 6 C 0.126 3.874 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.405 3.595 16 O -0.393 6.393 17 C -0.189 4.189 18 C -0.095 4.095 19 C -0.075 4.075 20 C -0.199 4.199 21 C -0.199 4.199 22 H 0.124 0.876 23 H 0.136 0.864 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.504 5.225 -12.798 16.230 hybrid contribution 0.576 0.515 0.919 1.200 sum -7.928 5.740 -11.879 15.392 Atomic orbital electron populations 1.81195 1.12986 1.08986 1.09182 1.29064 0.95058 0.92928 0.92818 1.19871 0.81460 1.03648 1.04108 1.21317 0.81714 0.96348 1.01393 1.48112 1.05261 1.49654 1.28306 1.19468 0.92729 0.91148 0.84056 1.21449 1.36846 0.98411 1.00259 0.92163 1.24910 0.95180 0.95196 0.98613 1.69927 1.38142 1.14622 1.30451 0.86435 0.78136 0.80760 0.82071 1.19757 1.20937 1.20820 1.14808 0.85921 0.79228 0.79589 1.90849 1.12532 1.61767 1.74129 1.21181 0.98129 1.01349 0.98281 1.21105 0.98027 0.95424 0.94936 1.18811 0.97762 0.99192 0.91744 1.23096 1.03092 1.01519 0.92230 1.23099 1.03339 0.90859 1.02646 0.87563 0.86391 0.88420 0.90575 0.94139 0.93179 0.92643 0.85128 0.88066 0.87667 0.87646 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.77 18.54 42.15 0.78 -5.99 16 2 C 0.22 2.81 15.43 -20.76 -0.32 2.49 16 3 C -0.05 -0.57 6.03 -29.52 -0.18 -0.75 16 4 C 0.12 1.72 5.18 -4.04 -0.02 1.70 16 5 N -0.58 -11.29 2.46 -177.94 -0.44 -11.73 16 6 C 0.24 5.82 5.16 -5.20 -0.03 5.79 16 7 C -0.53 -14.23 9.39 -34.44 -0.32 -14.56 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 11 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.62 12.65 7.53 -14.33 -0.11 12.54 16 16 O -0.52 -12.82 16.66 5.27 0.09 -12.73 16 17 C -0.19 -3.12 11.68 -38.86 -0.45 -3.57 16 18 C -0.09 -1.28 13.46 -37.15 -0.50 -1.78 16 19 C -0.06 -0.56 6.21 -93.41 -0.58 -1.14 16 20 C -0.16 -1.31 10.21 -26.69 -0.27 -1.58 16 21 C -0.16 -1.35 10.21 -26.69 -0.27 -1.62 16 22 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 23 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 25 H 0.08 1.02 6.88 -51.93 -0.36 0.66 16 26 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -32.31 311.31 -6.40 -38.71 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.09 Total: -3.72 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -3.15 Total: -0.84 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 1.08 Total: -42.30 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.31 -6.40 -38.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625385402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.860 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds