Wall clock time and date at job start Sun Mar 29 2020 22:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31652 * 119.73842 * 2 1 4 4 C 1.31940 * 121.90538 * 179.74897 * 3 2 1 5 5 C 1.38397 * 121.13434 * 0.53318 * 4 3 2 6 6 C 1.38282 * 119.33629 * 359.74130 * 5 4 3 7 7 C 1.39793 * 119.73218 * 180.27786 * 2 1 3 8 8 C 1.47206 * 120.59031 * 359.97438 * 7 2 1 9 9 C 1.34807 * 120.00555 * 179.97438 * 8 7 2 10 10 C 1.46423 * 120.00183 * 179.97438 * 9 8 7 11 11 O 1.21694 * 120.00363 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99889 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99842 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46801 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00537 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99891 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99683 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00147 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46927 * 59.99920 * 18 16 14 20 20 H 1.48500 * 109.47263 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47151 * 300.00171 * 18 16 14 22 22 H 1.08999 * 109.47015 * 269.72601 * 1 2 3 23 23 H 1.09000 * 109.46646 * 29.71753 * 1 2 3 24 24 H 1.09000 * 109.47248 * 149.72471 * 1 2 3 25 25 H 1.07999 * 119.43328 * 180.25131 * 4 3 2 26 26 H 1.08003 * 120.33405 * 179.75894 * 5 4 3 27 27 H 1.07998 * 120.86903 * 179.97438 * 6 5 4 28 28 H 1.08002 * 120.00164 * 0.02562 * 8 7 2 29 29 H 1.08001 * 119.99811 * 0.02562 * 9 8 7 30 30 H 0.96999 * 120.00054 * 0.02562 * 12 10 9 31 31 H 1.08994 * 109.47457 * 299.99650 * 13 12 10 32 32 H 1.09002 * 109.47128 * 60.00710 * 13 12 10 33 33 H 0.96999 * 119.99902 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1601 1.1431 0.0000 4 6 3.4786 1.1930 0.0049 5 6 4.2384 0.0363 -0.0007 6 6 3.6029 -1.1918 -0.0062 7 6 2.2004 -1.2139 -0.0059 8 6 1.4715 -2.4928 -0.0115 9 6 2.1520 -3.6565 -0.0177 10 6 1.4270 -4.9286 -0.0227 11 8 0.2100 -4.9355 -0.0218 12 7 2.1073 -6.0920 -0.0294 13 6 1.3819 -7.3648 -0.0339 14 6 2.3676 -8.5048 -0.0404 15 1 3.4283 -8.3016 -0.0416 16 6 1.9153 -9.8073 -0.0460 17 7 0.6237 -10.0548 -0.0461 18 14 3.1370 -11.2203 -0.0548 19 1 3.9923 -11.1427 1.1567 20 1 2.4017 -12.5105 -0.0605 21 1 3.9884 -11.1310 -1.2683 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3632 0.8925 -0.5095 24 1 -0.3634 -0.8875 -0.5181 25 1 3.9733 2.1530 0.0088 26 1 5.3170 0.0923 -0.0005 27 1 4.1715 -2.1099 -0.0111 28 1 0.3915 -2.4989 -0.0115 29 1 3.2320 -3.6505 -0.0181 30 1 3.0773 -6.0866 -0.0305 31 1 0.7573 -7.4303 0.8570 32 1 0.7539 -7.4220 -0.9230 33 1 0.3054 -10.9711 -0.0496 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639707610.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:19 Heat of formation + Delta-G solvation = 1.453514 kcal Electronic energy + Delta-G solvation = -16206.878491 eV Core-core repulsion = 13425.428557 eV Total energy + Delta-G solvation = -2781.449934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44557 -38.80376 -34.81952 -34.12720 -33.29430 -32.35242 -30.65953 -27.90513 -27.22993 -24.86024 -22.95445 -22.14740 -20.78366 -19.25346 -17.75061 -16.71488 -16.35887 -15.84947 -15.18392 -14.86365 -14.72756 -14.28728 -14.25413 -13.71084 -13.48585 -12.83680 -12.64509 -12.40351 -12.31339 -11.98813 -11.91283 -11.34374 -11.01841 -10.93189 -10.78459 -10.34208 -9.70330 -9.68025 -9.44290 -9.21289 -8.76178 -8.44240 -7.88471 -6.18720 -4.26023 0.36477 1.02975 2.01748 3.23868 3.28720 3.30179 3.58680 3.94999 3.97993 4.12656 4.33769 4.52555 4.56676 4.69949 4.85287 5.09432 5.17370 5.30466 5.38214 5.44256 5.48104 5.66344 5.77303 5.88227 5.92733 6.35769 6.44977 6.48859 7.28172 7.38072 7.48556 7.63750 7.76523 7.94279 8.57782 8.74263 9.04227 9.40487 10.91501 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046836 B = 0.003647 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.688353 B = 7676.477550 C = 8253.718416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.146 3.854 3 N -0.487 5.487 4 C 0.102 3.898 5 C -0.179 4.179 6 C -0.063 4.063 7 C -0.111 4.111 8 C -0.052 4.052 9 C -0.178 4.178 10 C 0.525 3.475 11 O -0.558 6.558 12 N -0.703 5.703 13 C 0.248 3.752 14 C -0.546 4.546 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.124 0.876 30 H 0.392 0.608 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 19.115 0.105 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.008 3.992 3 N -0.196 5.196 4 C -0.055 4.055 5 C -0.199 4.199 6 C -0.088 4.088 7 C -0.113 4.113 8 C -0.072 4.072 9 C -0.199 4.199 10 C 0.311 3.689 11 O -0.439 6.439 12 N -0.350 5.350 13 C 0.127 3.873 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.173 0.827 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.461 19.664 0.098 20.408 hybrid contribution 1.813 -1.658 0.008 2.457 sum 7.274 18.006 0.106 19.420 Atomic orbital electron populations 1.20838 0.88428 1.03995 1.03621 1.21564 0.97096 0.87304 0.93252 1.67473 1.10050 1.29117 1.12990 1.22817 0.89391 0.98556 0.94736 1.22060 1.01567 0.93244 1.03038 1.21898 0.93602 0.98807 0.94536 1.19905 0.93781 0.94346 1.03248 1.22200 1.00570 0.89572 0.94879 1.23251 1.00203 0.93266 1.03179 1.18264 0.87655 0.84502 0.78430 1.90771 1.13618 1.88005 1.51544 1.46411 1.10195 1.07171 1.71246 1.19145 0.92544 0.77671 0.97893 1.21188 0.92922 0.90774 1.53511 0.91914 1.24954 0.95456 0.98943 0.94638 1.69961 1.12823 1.20778 1.48687 0.86461 0.80747 0.80920 0.78700 1.20043 1.21039 1.20049 0.89909 0.90267 0.89838 0.82730 0.84572 0.84241 0.84042 0.85861 0.77569 0.95341 0.95331 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.69 36.01 0.35 -0.75 16 2 C 0.15 1.73 6.83 -82.08 -0.56 1.17 16 3 N -0.49 -5.78 10.26 -9.07 -0.09 -5.87 16 4 C 0.10 0.96 11.17 -17.45 -0.19 0.77 16 5 C -0.18 -1.56 10.09 -39.51 -0.40 -1.95 16 6 C -0.06 -0.64 9.52 -38.80 -0.37 -1.01 16 7 C -0.11 -1.32 5.88 -104.91 -0.62 -1.94 16 8 C -0.05 -0.70 8.89 -37.16 -0.33 -1.03 16 9 C -0.18 -2.60 9.42 -37.51 -0.35 -2.96 16 10 C 0.52 10.53 7.74 -12.97 -0.10 10.43 16 11 O -0.56 -13.40 16.23 5.19 0.08 -13.31 16 12 N -0.70 -14.78 5.54 -62.88 -0.35 -15.13 16 13 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 14 C -0.55 -14.74 9.28 -34.44 -0.32 -15.06 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 22 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.80 6.32 -51.93 -0.33 0.47 16 25 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.14 1.16 6.29 -52.49 -0.33 0.83 16 28 H 0.14 1.98 5.84 -52.49 -0.31 1.68 16 29 H 0.12 1.40 6.14 -52.49 -0.32 1.07 16 30 H 0.39 6.95 8.30 -40.82 -0.34 6.61 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -33.03 293.07 -6.94 -39.98 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.70 Total: 3.62 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.02 Total: -4.11 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.29 Total: -46.27 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.03 -6.94 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639707610.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.431 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds