Wall clock time and date at job start Sun Mar 29 2020 22:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31664 * 119.73947 * 2 1 4 4 C 1.31941 * 121.90457 * 180.02562 * 3 2 1 5 5 C 1.38387 * 121.13886 * 359.97438 * 4 3 2 6 6 C 1.38290 * 119.33387 * 359.74781 * 5 4 3 7 7 C 1.39799 * 119.73509 * 179.97438 * 2 1 3 8 8 C 1.47208 * 120.58546 * 359.97438 * 7 2 1 9 9 C 1.34808 * 119.99782 * 134.91104 * 8 7 2 10 10 C 1.46427 * 120.00066 * 348.31348 * 9 8 7 11 11 O 1.21691 * 120.00164 * 353.83795 * 10 9 8 12 12 N 1.34777 * 119.99673 * 173.83468 * 10 9 8 13 13 C 1.46501 * 119.99660 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47182 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99675 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99981 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99976 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00394 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47018 * 90.00166 * 18 16 14 20 20 H 1.48500 * 109.47394 * 210.00542 * 18 16 14 21 21 H 1.48501 * 109.46713 * 330.00398 * 18 16 14 22 22 H 1.09001 * 109.46920 * 270.01513 * 1 2 3 23 23 H 1.08998 * 109.47246 * 30.01367 * 1 2 3 24 24 H 1.08988 * 109.47540 * 150.01683 * 1 2 3 25 25 H 1.08000 * 119.42934 * 180.02562 * 4 3 2 26 26 H 1.08003 * 120.33233 * 180.02562 * 5 4 3 27 27 H 1.08002 * 120.86677 * 180.29618 * 6 5 4 28 28 H 1.07998 * 120.00123 * 314.91530 * 8 7 2 29 29 H 1.08000 * 119.99590 * 168.03205 * 9 8 7 30 30 H 0.96995 * 120.00422 * 359.97438 * 12 10 9 31 31 H 1.09003 * 109.46997 * 300.00170 * 13 12 10 32 32 H 1.09005 * 109.47241 * 60.00248 * 13 12 10 33 33 H 0.96998 * 120.00158 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1601 1.1432 0.0000 4 6 3.4786 1.1931 -0.0005 5 6 4.2384 0.0365 -0.0005 6 6 3.6028 -1.1917 0.0053 7 6 2.2003 -1.2139 0.0005 8 6 1.4714 -2.4929 0.0017 9 6 1.8535 -3.4871 -0.8246 10 6 2.8161 -3.2201 -1.8953 11 8 3.1858 -2.0810 -2.1110 12 7 3.2926 -4.2361 -2.6418 13 6 4.2552 -3.9689 -3.7133 14 6 4.6260 -5.2635 -4.3899 15 1 4.1886 -6.1924 -4.0549 16 6 5.5242 -5.2621 -5.4358 17 7 5.8482 -6.3919 -6.0260 18 14 6.2813 -3.6555 -6.0148 19 1 7.5363 -3.4004 -5.2630 20 1 6.5831 -3.7451 -7.4661 21 1 5.3262 -2.5438 -5.7756 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5140 24 1 -0.3634 -0.8900 -0.5135 25 1 3.9733 2.1531 -0.0001 26 1 5.3170 0.0925 -0.0005 27 1 4.1715 -2.1099 0.0102 28 1 0.6306 -2.6346 0.6644 29 1 1.4531 -4.4816 -0.6940 30 1 2.9983 -5.1441 -2.4696 31 1 3.8087 -3.2930 -4.4427 32 1 5.1496 -3.5095 -3.2922 33 1 6.4798 -6.3909 -6.7621 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639707611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:21 Heat of formation + Delta-G solvation = 16.189752 kcal Electronic energy + Delta-G solvation = -17039.736615 eV Core-core repulsion = 14258.925692 eV Total energy + Delta-G solvation = -2780.810923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23519 -38.82521 -34.78217 -33.90646 -32.81947 -32.40960 -30.63228 -28.16107 -27.27522 -24.49646 -22.61483 -21.83671 -20.91671 -19.32955 -17.51053 -16.64964 -16.13748 -16.02980 -15.31803 -14.67176 -14.48434 -14.34088 -13.86477 -13.57747 -13.07141 -12.91915 -12.66522 -12.39387 -12.37732 -12.18206 -12.09563 -11.45798 -11.05776 -10.81766 -10.31615 -10.00199 -9.56310 -9.51808 -9.17836 -8.99797 -8.79990 -8.17875 -8.12323 -6.25271 -4.27844 0.77055 1.51271 1.97013 3.23148 3.30393 3.38720 3.74168 3.99542 4.03343 4.29879 4.43582 4.75162 4.93233 5.02851 5.10101 5.16885 5.38060 5.43532 5.55363 5.58871 5.66002 5.81697 6.04695 6.13874 6.16588 6.40489 6.52918 6.78563 6.90685 7.01980 7.17576 7.34479 8.09798 8.17114 8.46720 8.71058 8.88457 9.34749 10.86689 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.005523 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.759949 B = 5068.168788 C = 5610.530804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.134 3.866 3 N -0.497 5.497 4 C 0.105 3.895 5 C -0.187 4.187 6 C 0.005 3.995 7 C -0.107 4.107 8 C -0.041 4.041 9 C -0.192 4.192 10 C 0.520 3.480 11 O -0.549 6.549 12 N -0.696 5.696 13 C 0.221 3.779 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.261 1.261 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.130 0.870 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.397 0.603 31 H 0.025 0.975 32 H 0.021 0.979 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 8.799 13.983 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.003 4.003 3 N -0.207 5.207 4 C -0.053 4.053 5 C -0.207 4.207 6 C -0.020 4.020 7 C -0.110 4.110 8 C -0.061 4.061 9 C -0.213 4.213 10 C 0.307 3.693 11 O -0.430 6.430 12 N -0.343 5.343 13 C 0.098 3.902 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.167 0.833 26 H 0.148 0.852 27 H 0.143 0.857 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.231 0.769 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.157 10.263 13.619 18.904 hybrid contribution 0.980 -0.708 -0.541 1.324 sum -7.177 9.555 13.078 17.716 Atomic orbital electron populations 1.20685 0.89231 1.03409 1.02571 1.21313 0.96396 0.87534 0.95085 1.67356 1.10026 1.29064 1.14260 1.22617 0.89380 0.98173 0.95100 1.21898 1.01183 0.93397 1.04258 1.21503 0.93065 0.98056 0.89424 1.19612 0.93936 0.93756 1.03650 1.22124 0.96339 0.91107 0.96567 1.23246 1.01134 0.99726 0.97161 1.18488 0.81965 0.85618 0.83198 1.90825 1.60375 1.21202 1.70631 1.46207 1.44285 1.09396 1.34448 1.19493 0.87546 0.97798 0.85331 1.21091 1.27245 0.92817 1.17137 0.90233 1.24789 0.95632 0.96533 0.95588 1.69878 1.33709 1.25885 1.23415 0.86826 0.80381 0.84256 0.78286 1.19842 1.20833 1.18557 0.90660 0.90611 0.90832 0.83319 0.85231 0.85703 0.84717 0.84887 0.76923 0.95671 0.96145 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.75 36.00 0.35 -0.75 16 2 C 0.13 1.95 6.83 -82.08 -0.56 1.39 16 3 N -0.50 -7.71 10.26 -9.07 -0.09 -7.80 16 4 C 0.10 1.48 11.17 -17.45 -0.19 1.28 16 5 C -0.19 -2.70 10.09 -39.51 -0.40 -3.10 16 6 C 0.01 0.08 6.81 -38.80 -0.26 -0.18 16 7 C -0.11 -1.59 4.46 -104.91 -0.47 -2.05 16 8 C -0.04 -0.50 8.34 -37.16 -0.31 -0.81 16 9 C -0.19 -2.55 9.93 -37.50 -0.37 -2.93 16 10 C 0.52 9.60 6.90 -12.96 -0.09 9.51 16 11 O -0.55 -11.88 12.29 5.20 0.06 -11.81 16 12 N -0.70 -13.80 5.54 -62.88 -0.35 -14.15 16 13 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 14 C -0.55 -14.84 9.83 -34.44 -0.34 -15.17 16 15 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 18 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.73 7.07 -51.94 -0.37 0.36 16 25 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 27 H 0.13 1.95 7.31 -52.49 -0.38 1.57 16 28 H 0.14 1.13 7.97 -52.49 -0.42 0.71 16 29 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.40 6.89 8.30 -40.82 -0.34 6.55 16 31 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 32 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -33.11 286.39 -6.69 -39.80 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.97 Total: 3.84 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.77 Total: -5.35 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.33 Total: -47.53 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.11 -6.69 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639707611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.987 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds