Wall clock time and date at job start Sun Mar 29 2020 23:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.33992 * 124.91874 * 89.72341 * 14 13 12 16 16 C 1.46659 * 106.10092 * 179.86464 * 15 14 13 17 17 C 1.39496 * 134.67334 * 180.09752 * 16 15 14 18 18 C 1.38297 * 117.99287 * 180.31971 * 17 16 15 19 19 C 1.38601 * 119.30658 * 0.02562 * 18 17 16 20 20 N 1.31639 * 121.60077 * 359.97438 * 19 18 17 21 21 C 1.32515 * 121.71336 * 0.02562 * 20 19 18 22 22 O 1.34457 * 124.92151 * 270.02403 * 14 13 12 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 28 28 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 29 29 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 30 30 H 1.08008 * 126.94616 * 359.97438 * 15 14 13 31 31 H 1.08002 * 121.00397 * 0.33705 * 17 16 15 32 32 H 1.07997 * 120.34640 * 179.97438 * 18 17 16 33 33 H 1.07998 * 119.19996 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.8768 -0.6401 3.9007 16 6 3.8972 -1.4352 5.1329 17 6 4.9002 -1.9014 5.9828 18 6 4.5231 -2.6515 7.0818 19 6 3.1788 -2.9110 7.2972 20 7 2.2498 -2.4601 6.4807 21 6 2.5527 -1.7366 5.4126 22 8 1.8097 -1.1683 4.4421 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.7089 1.1613 -3.4844 27 1 2.9173 -1.1206 1.0287 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6164 2.5525 30 1 4.7288 -0.2310 3.3779 31 1 5.9400 -1.6829 5.7887 32 1 5.2685 -3.0319 7.7646 33 1 2.8862 -3.4966 8.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658513260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:12 Heat of formation + Delta-G solvation = 45.764999 kcal Electronic energy + Delta-G solvation = -16772.381956 eV Core-core repulsion = 13992.853513 eV Total energy + Delta-G solvation = -2779.528444 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.51388 -38.93995 -36.16344 -33.60937 -32.75098 -31.36978 -30.39250 -28.12715 -25.65543 -24.85164 -23.51268 -22.27028 -21.10638 -19.91404 -17.99571 -17.22201 -16.36810 -16.33228 -16.07726 -14.96024 -14.37305 -13.95183 -13.74713 -13.66171 -13.33024 -12.98873 -12.97031 -12.55433 -12.31383 -11.74990 -11.22884 -10.92706 -10.86347 -10.72994 -10.40909 -10.19698 -10.09311 -9.51144 -9.05136 -8.92598 -8.56602 -8.35251 -7.48133 -6.09483 -4.16421 0.75924 1.07956 2.29452 2.41098 3.25457 3.33740 3.37878 3.65901 4.26180 4.35754 4.40416 4.71041 4.83024 4.93493 5.14840 5.22112 5.34194 5.41925 5.50932 5.72621 5.86724 5.93130 6.00553 6.29220 6.41824 6.77982 7.05794 7.10632 7.13659 7.36666 7.70392 7.74703 7.78657 8.17170 8.22796 8.50508 8.92031 9.49939 10.96881 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.044098 B = 0.004262 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.800381 B = 6568.282111 C = 6847.182577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.212 3.788 3 H 0.006 0.994 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.683 5.683 13 C 0.126 3.874 14 C 0.081 3.919 15 C -0.214 4.214 16 C -0.169 4.169 17 C -0.030 4.030 18 C -0.196 4.196 19 C 0.134 3.866 20 N -0.473 5.473 21 C 0.253 3.747 22 O -0.174 6.174 23 H 0.083 0.917 24 H 0.006 0.994 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.336 0.664 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -2.960 16.107 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.024 0.976 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.316 5.316 13 C -0.004 4.004 14 C 0.032 3.968 15 C -0.234 4.234 16 C -0.173 4.173 17 C -0.056 4.056 18 C -0.216 4.216 19 C -0.029 4.029 20 N -0.190 5.190 21 C 0.077 3.923 22 O -0.071 6.071 23 H 0.102 0.898 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.815 -3.225 16.174 17.488 hybrid contribution 2.035 0.228 -1.213 2.380 sum 7.850 -2.997 14.961 17.159 Atomic orbital electron populations 1.21749 0.97547 0.99682 0.99582 1.19183 0.92887 0.92461 0.84939 0.97638 1.21253 1.31720 1.12667 0.90239 0.92026 1.24910 0.94946 0.94966 0.99091 1.69901 1.36473 1.22812 1.23535 0.86437 0.78653 0.79596 0.82702 1.19720 1.20900 1.21035 1.60808 1.32707 1.32571 1.05487 1.20646 1.01855 0.92473 0.85391 1.22844 0.88825 0.94110 0.91025 1.22158 0.97193 1.06428 0.97651 1.20684 0.94969 1.03193 0.98418 1.20967 0.98917 0.93737 0.92026 1.21968 0.97777 1.02348 0.99554 1.22585 0.88183 0.95892 0.96215 1.66298 1.39288 1.11050 1.02323 1.19634 0.86441 0.95846 0.90392 1.83993 1.36301 1.56316 1.30492 0.89847 0.97515 0.94742 0.92856 0.84597 0.91803 0.89249 0.82084 0.84447 0.84089 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.19 37.16 0.34 -2.79 16 2 C 0.21 5.21 2.60 -68.86 -0.18 5.03 16 3 H 0.01 0.16 7.80 -51.93 -0.40 -0.25 16 4 C -0.52 -13.96 8.59 -34.44 -0.30 -14.25 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.68 -14.33 6.29 -109.21 -0.69 -15.01 16 13 C 0.13 2.19 5.98 -4.97 -0.03 2.16 16 14 C 0.08 1.34 6.75 -35.80 -0.24 1.10 16 15 C -0.21 -3.10 11.01 -37.68 -0.41 -3.52 16 16 C -0.17 -2.45 6.41 -105.14 -0.67 -3.13 16 17 C -0.03 -0.33 10.22 -39.09 -0.40 -0.73 16 18 C -0.20 -1.83 10.11 -39.43 -0.40 -2.22 16 19 C 0.13 1.45 11.14 -17.50 -0.20 1.26 16 20 N -0.47 -7.27 10.38 -12.98 -0.13 -7.40 16 21 C 0.25 4.25 8.58 -16.37 -0.14 4.11 16 22 O -0.17 -3.19 10.57 3.95 0.04 -3.14 16 23 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 24 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.34 6.83 8.22 -39.29 -0.32 6.51 16 28 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 29 H 0.09 1.57 7.44 -51.93 -0.39 1.19 16 30 H 0.16 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 286.64 15.07 4.32 4.32 Total: -1.00 -30.42 286.64 -7.46 -37.88 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.88 Total: 3.06 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.72 Total: -11.37 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.19 Total: -46.64 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.42 -7.46 -37.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.647 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds