Wall clock time and date at job start Sun Mar 29 2020 23:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 5 5 H 1.07998 * 120.00472 * 120.00016 * 4 2 1 6 6 C 1.37879 * 119.99705 * 299.99679 * 4 2 1 7 7 N 1.31516 * 120.00261 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00001 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47348 * 89.99570 * 8 6 4 10 10 H 1.48496 * 109.47246 * 210.00199 * 8 6 4 11 11 H 1.48509 * 109.46943 * 329.99773 * 8 6 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.50703 * 109.47107 * 179.97438 * 13 12 2 15 15 C 1.33990 * 124.92209 * 89.71893 * 14 13 12 16 16 C 1.46660 * 106.10039 * 179.86140 * 15 14 13 17 17 C 1.39500 * 134.67189 * 180.09379 * 16 15 14 18 18 C 1.38299 * 117.99355 * 180.32389 * 17 16 15 19 19 C 1.38601 * 119.30480 * 0.02562 * 18 17 16 20 20 N 1.31641 * 121.60203 * 359.97438 * 19 18 17 21 21 C 1.32511 * 121.71657 * 0.02562 * 20 19 18 22 22 O 1.34460 * 124.91758 * 270.02155 * 14 13 12 23 23 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 0.96997 * 119.99862 * 180.02562 * 7 6 4 27 27 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 28 28 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 29 29 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 30 30 H 1.08006 * 126.94783 * 359.97438 * 15 14 13 31 31 H 1.08005 * 121.00395 * 0.35349 * 17 16 15 32 32 H 1.08001 * 120.34595 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.19784 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6248 1.2788 2.6542 9 1 -0.8028 0.8725 2.6997 10 1 0.9759 1.9948 3.9069 11 1 0.8471 2.1764 1.4921 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5884 -0.5214 -3.5558 15 6 1.8147 -1.1702 -4.4365 16 6 2.7247 -1.7364 -5.4377 17 6 2.5591 -2.5031 -6.5912 18 6 3.6914 -2.8651 -7.2981 19 6 4.9352 -2.4589 -6.8410 20 7 5.0664 -1.7354 -5.7491 21 6 4.0172 -1.3597 -5.0322 22 8 3.8823 -0.6351 -3.9037 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9033 -0.5282 4.4375 27 1 1.4495 -1.4979 -1.4101 28 1 1.0870 0.6165 -2.5525 29 1 2.7588 1.0463 -2.1182 30 1 0.7383 -1.2569 -4.4147 31 1 1.5764 -2.8046 -6.9226 32 1 3.6072 -3.4587 -8.1964 33 1 5.8182 -2.7422 -7.3946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658513267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:13 Heat of formation + Delta-G solvation = 56.644297 kcal Electronic energy + Delta-G solvation = -16827.778263 eV Core-core repulsion = 14048.721581 eV Total energy + Delta-G solvation = -2779.056682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.57181 -38.98666 -36.56714 -33.65595 -32.68543 -31.45676 -30.84408 -28.64164 -25.57626 -24.97278 -23.57533 -22.33783 -21.17595 -20.36453 -18.04526 -17.25511 -16.50657 -16.40646 -16.23385 -15.09250 -14.70239 -14.05367 -13.79804 -13.61848 -13.37216 -13.09360 -13.05727 -12.70223 -12.53972 -12.25049 -12.00191 -11.36320 -11.10995 -10.84413 -10.56713 -10.19210 -9.60201 -9.54022 -9.25379 -9.09377 -8.61904 -8.44107 -7.63106 -6.07715 -4.06243 0.70833 1.04195 2.22931 2.34036 3.22043 3.31077 3.35669 3.62142 4.19405 4.33734 4.36317 4.67282 4.78092 4.88391 4.96575 5.19207 5.23139 5.30032 5.41189 5.54950 5.73387 5.85816 5.94446 6.07764 6.18600 6.22389 6.35393 6.38509 6.60798 6.98804 7.06714 7.58061 7.71483 7.75514 8.11370 8.62099 9.03988 9.53284 11.05730 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.051328 B = 0.004374 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.375027 B = 6399.355794 C = 6608.667694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.184 3.816 3 H 0.038 0.962 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.666 5.666 13 C 0.123 3.877 14 C 0.079 3.921 15 C -0.212 4.212 16 C -0.171 4.171 17 C -0.030 4.030 18 C -0.196 4.196 19 C 0.136 3.864 20 N -0.472 5.472 21 C 0.255 3.745 22 O -0.172 6.172 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.337 0.663 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -1.032 -21.073 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.076 3.924 3 H 0.056 0.944 4 C -0.540 4.540 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.223 1.223 11 H -0.194 1.194 12 N -0.297 5.297 13 C -0.006 4.006 14 C 0.030 3.970 15 C -0.233 4.233 16 C -0.174 4.174 17 C -0.056 4.056 18 C -0.216 4.216 19 C -0.027 4.027 20 N -0.189 5.189 21 C 0.079 3.921 22 O -0.069 6.069 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.178 0.822 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.250 -0.517 -20.172 20.180 hybrid contribution -2.514 0.514 -0.307 2.584 sum -2.764 -0.003 -20.479 20.665 Atomic orbital electron populations 1.22886 1.01186 1.01161 0.99117 1.19699 0.88751 0.95286 0.88713 0.94393 1.20935 1.31498 1.13968 0.87573 0.89921 1.24938 0.95964 0.96616 0.95807 1.69879 1.45638 1.40290 0.97879 0.86893 0.80526 0.83861 0.77039 1.20723 1.22314 1.19431 1.60663 1.58763 1.08526 1.01790 1.20650 0.99103 0.94999 0.85884 1.22692 0.79182 0.98340 0.96774 1.22135 1.00140 1.04844 0.96169 1.20671 0.94783 1.03387 0.98570 1.20965 0.99619 0.93405 0.91617 1.21980 0.93235 1.04006 1.02389 1.22607 0.97660 0.92183 0.90239 1.66303 1.32090 1.13853 1.06646 1.19623 0.90066 0.94453 0.87958 1.83999 1.28413 1.59263 1.35224 0.92489 0.93343 0.95382 0.92585 0.84541 0.91891 0.88912 0.82153 0.84446 0.84038 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 8.64 37.16 0.32 -3.40 16 2 C 0.18 4.16 2.17 -68.86 -0.15 4.01 16 3 H 0.04 0.88 6.86 -51.93 -0.36 0.53 16 4 C -0.50 -13.97 9.42 -34.44 -0.32 -14.30 16 5 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 8 Si 0.89 21.40 24.37 -169.99 -4.14 17.26 16 9 H -0.28 -6.56 6.87 56.52 0.39 -6.18 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 12 N -0.67 -13.14 6.22 -109.22 -0.68 -13.82 16 13 C 0.12 1.96 5.98 -4.98 -0.03 1.93 16 14 C 0.08 1.24 6.75 -35.80 -0.24 1.00 16 15 C -0.21 -2.87 11.01 -37.68 -0.41 -3.28 16 16 C -0.17 -2.37 6.41 -105.14 -0.67 -3.04 16 17 C -0.03 -0.31 10.22 -39.09 -0.40 -0.71 16 18 C -0.20 -1.75 10.11 -39.43 -0.40 -2.15 16 19 C 0.14 1.44 11.14 -17.50 -0.19 1.24 16 20 N -0.47 -7.15 10.38 -12.98 -0.13 -7.28 16 21 C 0.26 4.18 8.58 -16.37 -0.14 4.04 16 22 O -0.17 -3.07 10.57 3.94 0.04 -3.03 16 23 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 24 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 25 H 0.03 0.47 7.45 -51.92 -0.39 0.08 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.34 6.20 8.46 -39.29 -0.33 5.87 16 28 H 0.06 0.86 7.44 -51.93 -0.39 0.47 16 29 H 0.09 1.49 8.06 -51.93 -0.42 1.08 16 30 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -32.58 280.15 -6.43 -39.01 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.77 Total: 3.09 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.74 Total: -12.81 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.04 Total: -47.73 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.26 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.58 -6.43 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658513267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.651 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds