Wall clock time and date at job start Sun Mar 29 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47115 * 2 1 4 4 N 1.30166 * 119.20020 * 305.01994 * 3 2 1 5 5 C 1.34770 * 121.93291 * 179.97438 * 4 3 2 6 6 C 1.43203 * 119.91335 * 179.97438 * 5 4 3 7 7 N 5.82000 * 86.73251 * 330.58155 * 2 1 3 8 8 C 1.36786 * 120.17412 * 0.02562 * 5 4 3 9 9 C 1.42080 * 118.46128 * 359.97438 * 8 5 4 10 10 N 1.31364 * 120.88038 * 180.29830 * 9 8 5 11 11 C 1.46500 * 120.00342 * 353.78305 * 10 9 8 12 12 H 1.09000 * 109.46579 * 5.10063 * 11 10 9 13 13 C 1.52992 * 109.47397 * 125.10233 * 11 10 9 14 14 C 1.50703 * 109.46876 * 245.10266 * 11 10 9 15 15 H 1.07992 * 120.00224 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99496 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00490 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99728 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47273 * 59.99967 * 18 16 14 20 20 H 1.48507 * 109.46873 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46985 * 299.99603 * 18 16 14 22 22 N 1.35793 * 119.20395 * 124.99583 * 3 2 1 23 23 H 0.97003 * 120.19808 * 359.97438 * 22 3 2 24 24 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47058 * 300.00409 * 1 2 3 26 26 H 1.09007 * 109.46594 * 60.00301 * 1 2 3 27 27 H 1.08995 * 109.47058 * 239.99591 * 2 1 3 28 28 H 1.09003 * 109.46844 * 119.99247 * 2 1 3 29 29 H 1.07996 * 120.77352 * 180.02562 * 8 5 4 30 30 H 1.09004 * 109.47112 * 59.99898 * 13 11 10 31 31 H 1.08997 * 109.47669 * 180.02562 * 13 11 10 32 32 H 1.09000 * 109.47223 * 300.00323 * 13 11 10 33 33 H 0.96996 * 120.00281 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.6293 2.2369 -0.9305 5 6 2.0429 3.5185 -0.9829 6 6 1.5721 4.3787 -2.0265 7 7 1.1983 5.0613 -2.8540 8 6 2.9119 3.9994 -0.0424 9 6 3.3596 3.1190 0.9789 10 7 4.1897 3.5324 1.9094 11 6 4.7726 4.8740 1.8276 12 1 4.3351 5.4094 0.9849 13 6 4.4824 5.6360 3.1221 14 6 6.2629 4.7631 1.6332 15 1 6.7293 3.7908 1.5767 16 6 7.0309 5.9033 1.5275 17 7 6.4630 7.0876 1.5958 18 14 8.8782 5.7660 1.2859 19 1 9.1594 5.0262 0.0294 20 1 9.4688 7.1260 1.2018 21 1 9.4747 5.0368 2.4338 22 7 2.8941 1.8189 0.9710 23 1 3.1808 1.1938 1.6552 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.2492 5.0248 -0.0748 30 1 4.9199 5.1005 3.9647 31 1 4.9156 6.6343 3.0611 32 1 3.4045 5.7161 3.2627 33 1 7.0034 7.8896 1.5218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596104396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:23 Heat of formation + Delta-G solvation = 90.798781 kcal Electronic energy + Delta-G solvation = -16946.020737 eV Core-core repulsion = 14200.737856 eV Total energy + Delta-G solvation = -2745.282881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76209 -36.65321 -36.17790 -34.23399 -33.85319 -32.12494 -30.11403 -28.34585 -25.29480 -25.20688 -24.59245 -21.96954 -19.89789 -18.62954 -18.30524 -17.17239 -16.16633 -15.43652 -15.05553 -14.72027 -14.23357 -14.08694 -13.51060 -13.31944 -12.87989 -12.78068 -12.68197 -12.54867 -11.76829 -11.73477 -11.46124 -11.27164 -11.01486 -10.82141 -10.62595 -10.52590 -10.16745 -9.97183 -9.79012 -9.24889 -8.68728 -8.14802 -7.07111 -6.09765 -4.16856 0.66085 2.05802 2.70410 2.91351 3.17078 3.27881 3.32231 3.35909 3.69244 4.04790 4.22762 4.37302 4.78083 4.99477 5.07504 5.17957 5.25601 5.39450 5.53677 5.62409 5.74727 5.93494 6.04990 6.19783 6.62104 6.81965 6.99687 7.10060 7.30685 7.46735 7.56216 7.72584 7.96850 8.03971 8.24874 8.69906 8.94812 9.48745 10.95291 Molecular weight = 246.12amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.005912 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.847851 B = 4735.340023 C = 5242.881086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.415 3.585 4 N -0.548 5.548 5 C 0.183 3.817 6 C 0.280 3.720 7 N -0.409 5.409 8 C -0.146 4.146 9 C 0.342 3.658 10 N -0.533 5.533 11 C 0.208 3.792 12 H 0.017 0.983 13 C -0.126 4.126 14 C -0.504 4.504 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 N -0.622 5.622 23 H 0.418 0.582 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.036 0.964 31 H 0.090 0.910 32 H 0.007 0.993 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 -13.214 -1.028 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C 0.147 3.853 4 N -0.275 5.275 5 C 0.066 3.934 6 C -0.037 4.037 7 N -0.085 5.085 8 C -0.177 4.177 9 C 0.069 3.931 10 N -0.255 5.255 11 C 0.100 3.900 12 H 0.035 0.965 13 C -0.184 4.184 14 C -0.543 4.543 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.729 3.271 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.249 5.249 23 H 0.256 0.744 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.180 0.820 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.026 0.974 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.904 -12.092 -2.165 15.779 hybrid contribution 1.680 0.394 0.485 1.793 sum -8.223 -11.698 -1.680 14.397 Atomic orbital electron populations 1.21691 0.92634 1.02306 1.03522 1.20628 0.98054 0.87504 1.04669 1.22751 0.84313 0.95728 0.82542 1.67729 1.31280 1.02881 1.25567 1.15701 0.96922 0.89198 0.91586 1.25021 0.93272 0.92827 0.92568 1.81185 1.08210 1.09685 1.09450 1.22965 0.97386 1.03044 0.94313 1.18694 0.96408 0.84464 0.93541 1.72280 1.09063 1.22617 1.21587 1.19427 0.94407 0.81451 0.94720 0.96544 1.21734 0.96219 1.02981 0.97500 1.20975 0.90499 0.92949 1.49838 0.92143 1.24926 0.98975 0.95114 0.95031 1.69861 1.35782 0.97386 1.50001 0.86492 0.84628 0.77136 0.78796 1.20254 1.21138 1.20101 1.42681 1.42643 1.11181 1.28386 0.74412 0.91670 0.92460 0.90798 0.87876 0.89380 0.82007 0.94527 0.89133 0.97428 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.76 37.16 0.36 -0.59 16 2 C -0.07 -0.47 6.42 -27.88 -0.18 -0.65 16 3 C 0.42 4.83 7.15 -155.00 -1.11 3.72 16 4 N -0.55 -7.78 9.76 -8.51 -0.08 -7.86 16 5 C 0.18 2.98 6.56 -85.18 -0.56 2.42 16 6 C 0.28 4.73 15.54 -22.47 -0.35 4.38 16 7 N -0.41 -7.36 18.54 41.84 0.78 -6.58 16 8 C -0.15 -2.64 8.97 -38.64 -0.35 -2.99 16 9 C 0.34 6.25 7.72 -155.63 -1.20 5.05 16 10 N -0.53 -11.67 10.26 -54.69 -0.56 -12.23 16 11 C 0.21 5.23 2.80 -69.08 -0.19 5.04 16 12 H 0.02 0.44 5.20 -51.93 -0.27 0.17 16 13 C -0.13 -3.08 9.29 37.15 0.35 -2.74 16 14 C -0.50 -13.86 8.84 -34.44 -0.30 -14.16 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.62 -8.26 5.42 -9.30 -0.05 -8.31 16 23 H 0.42 4.47 8.64 -40.82 -0.35 4.12 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.39 7.89 -51.93 -0.41 -0.02 16 29 H 0.16 3.16 5.79 -52.49 -0.30 2.86 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -31.10 292.87 -7.25 -38.35 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.72 Total: -0.69 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.63 Total: 1.05 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.71 Total: -59.30 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.10 -7.25 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596104396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.145 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds