Wall clock time and date at job start Sun Mar 29 2020 22:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47115 * 2 1 4 4 N 1.30166 * 119.20020 * 305.01994 * 3 2 1 5 5 C 1.34770 * 121.93291 * 179.97438 * 4 3 2 6 6 C 1.43203 * 119.91335 * 179.97438 * 5 4 3 7 7 N 5.82000 * 86.73251 * 330.58155 * 2 1 3 8 8 C 1.36786 * 120.17412 * 0.02562 * 5 4 3 9 9 C 1.42080 * 118.46128 * 359.97438 * 8 5 4 10 10 N 1.31364 * 120.88038 * 180.29830 * 9 8 5 11 11 C 1.46500 * 120.00342 * 353.78305 * 10 9 8 12 12 H 1.09000 * 109.46579 * 5.10063 * 11 10 9 13 13 C 1.52992 * 109.47397 * 125.10233 * 11 10 9 14 14 C 1.50703 * 109.46876 * 245.10266 * 11 10 9 15 15 H 1.07992 * 120.00224 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99496 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00490 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99728 * 180.02562 * 16 14 11 19 19 H 1.48496 * 109.47273 * 59.99967 * 18 16 14 20 20 H 1.48507 * 109.46873 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46985 * 299.99603 * 18 16 14 22 22 N 1.35793 * 119.20395 * 124.99583 * 3 2 1 23 23 H 0.97003 * 120.19808 * 359.97438 * 22 3 2 24 24 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47058 * 300.00409 * 1 2 3 26 26 H 1.09007 * 109.46594 * 60.00301 * 1 2 3 27 27 H 1.08995 * 109.47058 * 239.99591 * 2 1 3 28 28 H 1.09003 * 109.46844 * 119.99247 * 2 1 3 29 29 H 1.07996 * 120.77352 * 180.02562 * 8 5 4 30 30 H 1.09004 * 109.47112 * 59.99898 * 13 11 10 31 31 H 1.08997 * 109.47669 * 180.02562 * 13 11 10 32 32 H 1.09000 * 109.47223 * 300.00323 * 13 11 10 33 33 H 0.96996 * 120.00281 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.6293 2.2369 -0.9305 5 6 2.0429 3.5185 -0.9829 6 6 1.5721 4.3787 -2.0265 7 7 1.1983 5.0613 -2.8540 8 6 2.9119 3.9994 -0.0424 9 6 3.3596 3.1190 0.9789 10 7 4.1897 3.5324 1.9094 11 6 4.7726 4.8740 1.8276 12 1 4.3351 5.4094 0.9849 13 6 4.4824 5.6360 3.1221 14 6 6.2629 4.7631 1.6332 15 1 6.7293 3.7908 1.5767 16 6 7.0309 5.9033 1.5275 17 7 6.4630 7.0876 1.5958 18 14 8.8782 5.7660 1.2859 19 1 9.1594 5.0262 0.0294 20 1 9.4688 7.1260 1.2018 21 1 9.4747 5.0368 2.4338 22 7 2.8941 1.8189 0.9710 23 1 3.1808 1.1938 1.6552 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.2492 5.0248 -0.0748 30 1 4.9199 5.1005 3.9647 31 1 4.9156 6.6343 3.0611 32 1 3.4045 5.7161 3.2627 33 1 7.0034 7.8896 1.5218 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596104396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:23 Heat of formation + Delta-G solvation = 70.476096 kcal Electronic energy + Delta-G solvation = -16946.901995 eV Core-core repulsion = 14200.737856 eV Total energy + Delta-G solvation = -2746.164139 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.118 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03346 -38.07445 -37.68516 -35.49202 -35.34949 -33.58097 -31.51467 -29.92767 -27.26491 -26.47577 -25.73894 -23.33061 -21.26416 -20.05413 -19.56379 -18.72021 -17.97252 -16.91030 -16.51945 -15.84051 -15.77727 -15.04039 -14.93885 -14.73389 -14.50544 -14.15615 -13.97411 -13.77850 -13.32216 -13.06177 -12.84442 -12.61501 -12.41032 -12.36927 -12.21699 -12.13325 -11.88557 -11.45271 -11.11047 -10.96350 -10.64932 -9.91898 -8.58584 -8.11553 -6.29126 -0.67580 0.80245 1.31489 1.40555 1.42227 1.50055 1.68450 1.77392 2.33106 2.40687 2.72931 3.11644 3.21114 3.78493 3.92843 4.07701 4.32227 4.44532 4.55753 4.70515 4.75562 4.91817 4.98602 5.15449 5.16384 5.25212 5.38688 5.54270 5.57890 5.71772 5.93780 6.13778 6.18020 6.26679 6.75350 6.82966 7.20286 7.44480 8.89062 Molecular weight = 246.12amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.005912 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.847851 B = 4735.340023 C = 5242.881086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 C 0.434 3.566 4 N -0.561 5.561 5 C 0.221 3.779 6 C 0.288 3.712 7 N -0.423 5.423 8 C -0.194 4.194 9 C 0.365 3.635 10 N -0.576 5.576 11 C 0.211 3.789 12 H -0.003 1.003 13 C -0.115 4.115 14 C -0.523 4.523 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.962 3.038 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.270 1.270 22 N -0.604 5.604 23 H 0.435 0.565 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.030 0.970 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 -16.058 -1.400 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C 0.168 3.832 4 N -0.288 5.288 5 C 0.102 3.898 6 C -0.029 4.029 7 N -0.099 5.099 8 C -0.226 4.226 9 C 0.092 3.908 10 N -0.301 5.301 11 C 0.102 3.898 12 H 0.015 0.985 13 C -0.173 4.173 14 C -0.561 4.561 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.195 1.195 22 N -0.230 5.230 23 H 0.276 0.724 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.560 -15.012 -2.521 18.526 hybrid contribution 1.656 1.097 0.463 2.039 sum -8.904 -13.915 -2.059 16.648 Atomic orbital electron populations 1.21698 0.92135 1.03772 1.02439 1.20990 0.98166 0.83895 1.07476 1.23959 0.81770 0.97226 0.80276 1.67902 1.32098 1.01897 1.26908 1.15707 0.94485 0.89833 0.89755 1.25118 0.92867 0.92509 0.92405 1.81187 1.08631 1.10076 1.10008 1.22632 1.00788 1.02534 0.96643 1.18848 0.94229 0.85808 0.91964 1.72199 1.12952 1.21021 1.23968 1.19140 0.93473 0.83388 0.93806 0.98537 1.21557 0.96780 1.01523 0.97446 1.21258 0.92306 0.92537 1.50017 0.93283 1.25699 1.03168 0.94785 0.94735 1.69983 1.37153 0.97853 1.50577 0.85546 0.79623 0.77295 0.78796 1.19893 1.20529 1.19482 1.42783 1.41770 1.09556 1.28919 0.72403 0.88977 0.92983 0.92512 0.85681 0.85812 0.84461 0.95062 0.91466 0.96051 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.76 71.98 0.70 -0.60 16 2 C -0.07 -0.58 6.42 29.85 0.19 -0.39 16 3 C 0.43 8.65 7.15 137.98 0.99 9.64 16 4 N -0.56 -14.63 9.76 -180.84 -1.76 -16.39 16 5 C 0.22 7.03 6.56 39.60 0.26 7.29 16 6 C 0.29 9.62 15.54 88.33 1.37 10.99 16 7 N -0.42 -15.04 18.54 19.01 0.35 -14.69 16 8 C -0.19 -7.15 8.97 22.88 0.21 -6.94 16 9 C 0.36 13.23 7.72 134.41 1.04 14.27 16 10 N -0.58 -25.68 10.26 -326.93 -3.35 -29.04 16 11 C 0.21 11.04 2.80 44.24 0.12 11.17 16 12 H 0.00 -0.15 5.20 -2.39 -0.01 -0.17 16 13 C -0.11 -5.82 9.29 71.98 0.67 -5.15 16 14 C -0.52 -29.59 8.84 25.60 0.23 -29.37 16 15 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.92 -52.77 11.32 21.45 0.24 -52.52 16 18 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 N -0.60 -14.55 5.42 -183.33 -0.99 -15.55 16 23 H 0.43 7.87 8.64 -92.71 -0.80 7.07 16 24 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.75 7.93 -2.38 -0.02 0.73 16 27 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.12 0.33 7.89 -2.39 -0.02 0.31 16 29 H 0.14 5.76 5.79 -2.91 -0.02 5.74 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -69.62 292.87 3.08 -66.53 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 0.35 Total: 3.46 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.23 Total: 12.21 kcal Atomic # 7 Polarization: -122.68 SS G_CDS: -5.52 Total: -128.19 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.62 3.08 -66.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596104396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.009 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds