Wall clock time and date at job start Sun Mar 29 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48494 * 109.47276 * 270.00198 * 3 2 1 5 5 H 1.48498 * 109.47221 * 30.00254 * 3 2 1 6 6 H 1.48499 * 109.47357 * 150.00113 * 3 2 1 7 7 C 1.40030 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.40597 * 119.78653 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.14725 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68296 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49121 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58331 * 179.97438 * 13 12 11 15 15 C 1.48001 * 111.00167 * 308.72348 * 14 13 12 16 16 C 1.50437 * 112.82693 * 191.34224 * 15 14 13 17 17 C 1.54311 * 108.50008 * 93.72972 * 16 15 14 18 18 C 1.45887 * 112.18557 * 281.46259 * 17 16 15 19 19 C 1.54316 * 112.17921 * 61.11954 * 18 17 16 20 20 C 1.47999 * 110.99905 * 180.02562 * 14 13 12 21 21 N 1.31978 * 120.83464 * 0.02562 * 13 12 11 22 22 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.42072 * 0.03962 * 10 9 7 24 24 H 1.08005 * 120.66031 * 180.02562 * 11 10 9 25 25 H 1.08001 * 120.25330 * 179.73025 * 12 11 10 26 26 H 1.09002 * 108.81197 * 312.21196 * 15 14 13 27 27 H 1.09008 * 108.81189 * 70.48377 * 15 14 13 28 28 H 1.09001 * 109.63519 * 334.02560 * 16 15 14 29 29 H 1.08997 * 109.79987 * 213.52672 * 16 15 14 30 30 H 1.08996 * 108.94378 * 160.76986 * 17 16 15 31 31 H 1.09001 * 108.93842 * 42.15608 * 17 16 15 32 32 H 1.09003 * 108.93750 * 300.42981 * 18 17 16 33 33 H 1.08991 * 108.94398 * 181.81421 * 18 17 16 34 34 H 1.08998 * 109.62675 * 161.76706 * 19 18 17 35 35 H 1.08998 * 109.63702 * 41.16618 * 19 18 17 36 36 H 1.08999 * 108.80769 * 205.70299 * 20 14 13 37 37 H 1.08997 * 108.80944 * 323.97022 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0874 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0083 -3.6515 -0.0016 11 6 1.3033 -4.8417 -0.0033 12 6 -0.0823 -4.7944 -0.0043 13 6 -0.7283 -3.5551 -0.0031 14 7 -2.1157 -3.5054 -0.0047 15 6 -2.6755 -4.3485 -1.0846 16 6 -4.1463 -4.1187 -1.3016 17 6 -4.3181 -3.0649 -2.4157 18 6 -4.0962 -1.7076 -1.9292 19 6 -2.6662 -1.5110 -1.3833 20 6 -2.5963 -2.1056 -0.0037 21 7 -0.0361 -2.4314 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 3.0883 -3.6554 -0.0002 24 1 1.8219 -5.7891 -0.0029 25 1 -0.6580 -5.7081 -0.0099 26 1 -2.1451 -4.1303 -2.0116 27 1 -2.5173 -5.3966 -0.8301 28 1 -4.5999 -3.7543 -0.3798 29 1 -4.6252 -5.0505 -1.6019 30 1 -5.3290 -3.1359 -2.8170 31 1 -3.6066 -3.2752 -3.2143 32 1 -4.8107 -1.4956 -1.1338 33 1 -4.2619 -1.0069 -2.7474 34 1 -2.4357 -0.4467 -1.3356 35 1 -1.9527 -2.0144 -2.0356 36 1 -3.5903 -2.0756 0.4427 37 1 -1.9220 -1.5029 0.6046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319738971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:18 Heat of formation + Delta-G solvation = 37.455076 kcal Electronic energy + Delta-G solvation = -18536.326569 eV Core-core repulsion = 15892.270875 eV Total energy + Delta-G solvation = -2644.055695 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.36952 -37.41763 -34.22079 -33.16016 -31.68769 -30.25467 -29.16023 -26.36136 -25.14036 -24.20590 -21.29816 -21.02135 -20.09826 -18.91366 -17.49788 -16.11855 -15.23687 -15.08369 -14.54119 -14.34258 -14.02775 -13.25472 -13.13409 -12.95857 -12.53102 -12.41082 -12.01002 -11.63361 -11.60678 -11.13236 -11.04458 -10.88951 -10.69134 -10.48759 -10.29246 -10.22083 -10.13494 -9.92517 -9.55440 -9.36714 -8.62585 -7.94902 -7.50842 -6.79967 -6.38944 -4.49461 2.77446 3.05605 3.09221 3.12131 3.24073 3.95435 4.51782 4.82133 5.08831 5.10616 5.34003 5.63742 5.72383 5.89620 5.96105 6.01074 6.03350 6.15279 6.23929 6.33044 6.39325 6.41320 6.48072 6.60184 6.64324 6.73175 6.76224 6.83981 6.98727 7.13309 7.22258 7.37437 7.59535 7.77736 7.86241 7.93102 8.26310 8.44087 8.74049 9.03765 10.13811 10.32950 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.009156 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.453461 B = 3057.409255 C = 4128.812960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.433 4.433 8 H 0.081 0.919 9 C 0.276 3.724 10 C -0.298 4.298 11 C -0.045 4.045 12 C -0.326 4.326 13 C 0.328 3.672 14 N -0.493 5.493 15 C 0.075 3.925 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.125 4.125 19 C -0.116 4.116 20 C 0.068 3.932 21 N -0.506 5.506 22 H 0.269 0.731 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -1.846 -2.953 7.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.151 4.151 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.464 4.464 8 H 0.099 0.901 9 C 0.149 3.851 10 C -0.321 4.321 11 C -0.070 4.070 12 C -0.351 4.351 13 C 0.090 3.910 14 N -0.212 5.212 15 C -0.051 4.051 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.058 4.058 21 N -0.224 5.224 22 H 0.081 0.919 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.454 -1.091 -2.547 7.952 hybrid contribution 1.124 0.118 -0.675 1.316 sum -6.330 -0.974 -3.222 7.169 Atomic orbital electron populations 1.70091 1.06996 1.27272 1.29307 1.25999 0.94904 1.00767 0.93474 0.86380 0.80549 0.81096 0.79068 1.19616 1.20218 1.18688 1.19551 0.94133 0.89366 1.43383 0.90054 1.18351 0.87553 0.91872 0.87309 1.21628 0.98510 0.93547 1.18437 1.20691 0.93638 0.96510 0.96112 1.20730 0.94296 0.95980 1.24112 1.19806 0.88353 0.90336 0.92489 1.58947 1.05414 1.13235 1.43599 1.21669 0.94101 0.96968 0.92380 1.21429 0.96184 0.98680 0.99369 1.20585 1.00774 0.95809 0.98215 1.20699 0.98766 0.96403 1.00343 1.21537 0.93953 1.02065 0.97938 1.21704 0.99557 0.87059 0.97500 1.68662 1.07555 1.24607 1.21583 0.91935 0.88643 0.88775 0.88888 0.94578 0.91439 0.90805 0.91569 0.92924 0.92566 0.92617 0.93182 0.91136 0.92271 0.93586 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.86 10.55 55.55 0.59 -17.27 16 2 C 0.07 1.82 5.50 -17.34 -0.10 1.72 16 3 Si 0.90 18.39 29.56 -169.99 -5.02 13.36 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.43 -11.45 9.14 -37.74 -0.34 -11.80 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.28 7.53 6.55 -85.00 -0.56 6.97 16 10 C -0.30 -7.49 9.83 -38.65 -0.38 -7.87 16 11 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 12 C -0.33 -7.64 9.29 -38.87 -0.36 -8.00 16 13 C 0.33 8.05 6.23 -155.31 -0.97 7.08 16 14 N -0.49 -10.43 4.72 -174.41 -0.82 -11.25 16 15 C 0.08 1.33 4.41 -4.50 -0.02 1.31 16 16 C -0.12 -1.70 5.63 -27.32 -0.15 -1.85 16 17 C -0.12 -1.61 5.30 -29.41 -0.16 -1.77 16 18 C -0.12 -1.87 5.30 -29.41 -0.16 -2.03 16 19 C -0.12 -2.20 5.44 -27.34 -0.15 -2.35 16 20 C 0.07 1.39 4.74 -4.52 -0.02 1.37 16 21 N -0.51 -13.48 5.71 -10.33 -0.06 -13.54 16 22 H 0.27 6.16 8.29 -40.82 -0.34 5.82 16 23 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 24 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 25 H 0.09 1.98 7.05 -52.49 -0.37 1.61 16 26 H 0.04 0.69 6.46 -51.93 -0.34 0.36 16 27 H 0.07 1.15 7.10 -51.92 -0.37 0.78 16 28 H 0.07 1.09 7.08 -51.93 -0.37 0.72 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 32 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.06 1.29 6.94 -51.93 -0.36 0.93 16 36 H 0.05 0.85 6.59 -51.93 -0.34 0.51 16 37 H 0.12 2.76 5.90 -51.93 -0.31 2.45 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -27.39 286.34 -10.08 -37.47 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.31 Total: 5.58 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.76 Total: -18.66 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.30 Total: -42.06 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.39 -10.08 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319738971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.922 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds