Wall clock time and date at job start Sun Mar 29 2020 22:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86796 * 120.00360 * 2 1 4 4 H 1.48494 * 109.47276 * 270.00198 * 3 2 1 5 5 H 1.48498 * 109.47221 * 30.00254 * 3 2 1 6 6 H 1.48499 * 109.47357 * 150.00113 * 3 2 1 7 7 C 1.40030 * 119.99566 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99793 * 179.97438 * 7 2 1 9 9 C 1.41308 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.40597 * 119.78653 * 180.02562 * 9 7 2 11 11 C 1.38342 * 119.14725 * 180.02562 * 10 9 7 12 12 C 1.38635 * 118.68296 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.49121 * 359.97438 * 12 11 10 14 14 N 1.38832 * 119.58331 * 179.97438 * 13 12 11 15 15 C 1.48001 * 111.00167 * 308.72348 * 14 13 12 16 16 C 1.50437 * 112.82693 * 191.34224 * 15 14 13 17 17 C 1.54311 * 108.50008 * 93.72972 * 16 15 14 18 18 C 1.45887 * 112.18557 * 281.46259 * 17 16 15 19 19 C 1.54316 * 112.17921 * 61.11954 * 18 17 16 20 20 C 1.47999 * 110.99905 * 180.02562 * 14 13 12 21 21 N 1.31978 * 120.83464 * 0.02562 * 13 12 11 22 22 H 0.97010 * 119.99787 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.42072 * 0.03962 * 10 9 7 24 24 H 1.08005 * 120.66031 * 180.02562 * 11 10 9 25 25 H 1.08001 * 120.25330 * 179.73025 * 12 11 10 26 26 H 1.09002 * 108.81197 * 312.21196 * 15 14 13 27 27 H 1.09008 * 108.81189 * 70.48377 * 15 14 13 28 28 H 1.09001 * 109.63519 * 334.02560 * 16 15 14 29 29 H 1.08997 * 109.79987 * 213.52672 * 16 15 14 30 30 H 1.08996 * 108.94378 * 160.76986 * 17 16 15 31 31 H 1.09001 * 108.93842 * 42.15608 * 17 16 15 32 32 H 1.09003 * 108.93750 * 300.42981 * 18 17 16 33 33 H 1.08991 * 108.94398 * 181.81421 * 18 17 16 34 34 H 1.08998 * 109.62675 * 161.76706 * 19 18 17 35 35 H 1.08998 * 109.63702 * 41.16618 * 19 18 17 36 36 H 1.08999 * 108.80769 * 205.70299 * 20 14 13 37 37 H 1.08997 * 108.80944 * 323.97022 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4391 2.6526 0.7001 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0874 -1.2128 -0.0010 9 6 1.3009 -2.4365 -0.0016 10 6 2.0083 -3.6515 -0.0016 11 6 1.3033 -4.8417 -0.0033 12 6 -0.0823 -4.7944 -0.0043 13 6 -0.7283 -3.5551 -0.0031 14 7 -2.1157 -3.5054 -0.0047 15 6 -2.6755 -4.3485 -1.0846 16 6 -4.1463 -4.1187 -1.3016 17 6 -4.3181 -3.0649 -2.4157 18 6 -4.0962 -1.7076 -1.9292 19 6 -2.6662 -1.5110 -1.3833 20 6 -2.5963 -2.1056 -0.0037 21 7 -0.0361 -2.4314 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 3.0883 -3.6554 -0.0002 24 1 1.8219 -5.7891 -0.0029 25 1 -0.6580 -5.7081 -0.0099 26 1 -2.1451 -4.1303 -2.0116 27 1 -2.5173 -5.3966 -0.8301 28 1 -4.5999 -3.7543 -0.3798 29 1 -4.6252 -5.0505 -1.6019 30 1 -5.3290 -3.1359 -2.8170 31 1 -3.6066 -3.2752 -3.2143 32 1 -4.8107 -1.4956 -1.1338 33 1 -4.2619 -1.0069 -2.7474 34 1 -2.4357 -0.4467 -1.3356 35 1 -1.9527 -2.0144 -2.0356 36 1 -3.5903 -2.0756 0.4427 37 1 -1.9220 -1.5029 0.6046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319738971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:18 Heat of formation + Delta-G solvation = 23.277236 kcal Electronic energy + Delta-G solvation = -18536.941366 eV Core-core repulsion = 15892.270875 eV Total energy + Delta-G solvation = -2644.670492 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01295 -39.07421 -35.88890 -34.88464 -33.15404 -32.08854 -30.95863 -28.04589 -26.80032 -25.72763 -23.08367 -22.83571 -21.33542 -20.51537 -19.36063 -17.82015 -16.80499 -16.72218 -16.25706 -15.97359 -15.60340 -14.93192 -14.66853 -14.44937 -14.13963 -13.86083 -13.70189 -13.24258 -13.06861 -12.78043 -12.75406 -12.61094 -12.39827 -12.09368 -11.78536 -11.76287 -11.49047 -11.35014 -11.20827 -10.95444 -10.41905 -9.84576 -9.40793 -8.61076 -8.24636 -6.46896 0.93109 1.21751 1.41121 1.52040 1.54892 2.23879 2.79889 3.05271 3.81960 3.88353 3.95106 4.14860 4.26156 4.35360 4.45370 4.55250 4.60178 4.71030 4.76897 4.81164 4.90310 4.95113 5.05137 5.08635 5.16576 5.23815 5.25954 5.35571 5.37439 5.47163 5.59033 5.66043 5.75458 5.91803 6.05475 6.09859 6.44432 6.56752 6.82746 7.10894 8.23131 8.47554 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.009156 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.453461 B = 3057.409255 C = 4128.812960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.030 3.970 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.082 0.918 9 C 0.240 3.760 10 C -0.325 4.325 11 C -0.042 4.042 12 C -0.333 4.333 13 C 0.312 3.688 14 N -0.495 5.495 15 C 0.076 3.924 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.116 4.116 19 C -0.104 4.104 20 C 0.074 3.926 21 N -0.526 5.526 22 H 0.276 0.724 23 H 0.103 0.897 24 H 0.130 0.870 25 H 0.116 0.884 26 H 0.016 0.984 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.023 0.977 36 H 0.069 0.931 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -2.134 -3.382 9.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.193 4.193 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.114 3.886 10 C -0.348 4.348 11 C -0.067 4.067 12 C -0.358 4.358 13 C 0.073 3.927 14 N -0.214 5.214 15 C -0.049 4.049 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.052 4.052 21 N -0.245 5.245 22 H 0.087 0.913 23 H 0.121 0.879 24 H 0.148 0.852 25 H 0.134 0.866 26 H 0.034 0.966 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.082 -1.404 -2.980 9.661 hybrid contribution 1.575 0.124 -0.526 1.665 sum -7.507 -1.281 -3.506 8.383 Atomic orbital electron populations 1.70189 1.08214 1.28500 1.28742 1.26821 0.95854 1.03807 0.92822 0.85226 0.79057 0.76374 0.79126 1.19155 1.19215 1.18461 1.19861 0.94459 0.90448 1.45065 0.89950 1.18849 0.88424 0.93163 0.88206 1.21801 0.99099 0.93879 1.20014 1.21074 0.93788 0.97348 0.94469 1.21058 0.94782 0.96489 1.23422 1.20312 0.89930 0.90471 0.91989 1.59047 1.03736 1.13866 1.44768 1.21824 0.96235 0.96607 0.90276 1.21447 0.93394 1.00467 0.99652 1.20579 1.02380 0.94612 0.97720 1.20635 0.95739 0.97861 1.01130 1.21359 0.96072 1.00249 0.96664 1.21599 0.99439 0.86446 0.97757 1.68669 1.07513 1.25859 1.22442 0.91324 0.87884 0.85225 0.86598 0.96600 0.90575 0.90696 0.88393 0.89590 0.93661 0.91089 0.91926 0.92829 0.95829 0.91324 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.97 10.55 21.84 0.23 -37.74 16 2 C 0.03 1.51 5.50 85.29 0.47 1.98 16 3 Si 0.98 38.34 29.56 68.60 2.03 40.37 16 4 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.47 -25.69 9.14 23.46 0.21 -25.47 16 8 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.24 13.64 6.55 40.19 0.26 13.90 16 10 C -0.33 -16.75 9.83 22.87 0.22 -16.52 16 11 C -0.04 -1.96 10.15 22.39 0.23 -1.73 16 12 C -0.33 -15.49 9.29 22.73 0.21 -15.28 16 13 C 0.31 15.55 6.23 133.40 0.83 16.38 16 14 N -0.50 -20.90 4.72 -705.70 -3.33 -24.23 16 15 C 0.08 2.60 4.41 85.26 0.38 2.97 16 16 C -0.11 -2.84 5.63 30.21 0.17 -2.67 16 17 C -0.12 -2.85 5.30 28.86 0.15 -2.69 16 18 C -0.12 -3.24 5.30 28.86 0.15 -3.09 16 19 C -0.10 -4.00 5.44 30.20 0.16 -3.84 16 20 C 0.07 3.04 4.74 85.25 0.40 3.44 16 21 N -0.53 -29.12 5.71 -186.58 -1.07 -30.18 16 22 H 0.28 12.96 8.29 -92.70 -0.77 12.19 16 23 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 24 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 25 H 0.12 4.75 7.05 -2.91 -0.02 4.73 16 26 H 0.02 0.60 6.46 -2.39 -0.02 0.58 16 27 H 0.08 2.43 7.10 -2.38 -0.02 2.42 16 28 H 0.07 1.93 7.08 -2.39 -0.02 1.91 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.23 7.52 -2.39 -0.02 1.21 16 32 H 0.07 1.79 7.52 -2.39 -0.02 1.77 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.02 1.05 6.94 -2.39 -0.02 1.03 16 36 H 0.07 2.46 6.59 -2.39 -0.02 2.44 16 37 H 0.08 3.80 5.90 -2.39 -0.01 3.79 16 Total: -1.00 -61.74 286.34 2.77 -58.96 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 1.05 Total: 25.43 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.86 Total: -32.61 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -4.17 Total: -92.15 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -61.74 2.77 -58.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319738971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.240 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds