Wall clock time and date at job start Sun Mar 29 2020 23:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69826 * 2 1 4 4 C 1.53530 * 109.58291 * 120.35040 * 2 1 3 5 5 N 1.47290 * 107.60634 * 177.99576 * 4 2 1 6 6 C 1.34772 * 121.14310 * 137.98227 * 5 4 2 7 7 O 1.21771 * 120.00269 * 185.94581 * 6 5 4 8 8 C 1.41818 * 119.99792 * 5.93919 * 6 5 4 9 9 H 1.07999 * 119.99674 * 8.16456 * 8 6 5 10 10 C 1.40136 * 119.99968 * 187.88057 * 8 6 5 11 11 N 1.30631 * 120.00141 * 0.28377 * 10 8 6 12 12 Si 1.86795 * 119.99732 * 180.27833 * 10 8 6 13 13 H 1.48496 * 109.47504 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47136 * 120.00722 * 12 10 8 15 15 H 1.48504 * 109.47138 * 240.00218 * 12 10 8 16 16 C 1.39991 * 117.72078 * 318.24745 * 5 4 2 17 17 C 1.38914 * 120.01504 * 193.99385 * 16 5 4 18 18 C 1.38151 * 119.82584 * 179.86664 * 17 16 5 19 19 C 1.38398 * 120.09699 * 359.75828 * 18 17 16 20 20 C 1.38205 * 120.34009 * 359.89542 * 19 18 17 21 21 C 1.38697 * 120.05220 * 0.02957 * 20 19 18 22 22 O 1.35854 * 119.67966 * 180.15984 * 21 20 19 23 23 H 1.09000 * 109.47277 * 299.65213 * 1 2 3 24 24 H 1.09006 * 109.46751 * 59.65092 * 1 2 3 25 25 H 1.08989 * 109.47048 * 179.64659 * 1 2 3 26 26 H 1.09001 * 109.83525 * 58.46561 * 4 2 1 27 27 H 1.09007 * 109.83402 * 297.51777 * 4 2 1 28 28 H 0.96998 * 120.00205 * 180.02562 * 11 10 8 29 29 H 1.08000 * 120.10119 * 359.60043 * 17 16 5 30 30 H 1.08006 * 119.95209 * 179.74236 * 18 17 16 31 31 H 1.08007 * 119.82852 * 179.91349 * 19 18 17 32 32 H 1.07994 * 119.97124 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7309 1.2483 5 7 3.5158 -0.7477 1.1799 6 6 4.2672 -0.5102 2.2732 7 8 5.4775 -0.4219 2.1728 8 6 3.6482 -0.3629 3.5406 9 1 2.5944 -0.5705 3.6542 10 6 4.4051 0.0462 4.6468 11 7 5.6796 0.2973 4.5093 12 14 3.5913 0.2327 6.3178 13 1 2.1506 -0.1098 6.2078 14 1 4.2438 -0.6800 7.2907 15 1 3.7329 1.6357 6.7835 16 6 4.1070 -1.0134 -0.0610 17 6 5.4580 -1.3284 -0.1338 18 6 6.0368 -1.5926 -1.3601 19 6 5.2718 -1.5484 -2.5126 20 6 3.9257 -1.2426 -2.4456 21 6 3.3338 -0.9772 -1.2197 22 8 2.0093 -0.6806 -1.1623 23 1 -0.3634 0.5084 0.8931 24 1 -0.3633 0.5193 -0.8869 25 1 -0.3633 -1.0275 -0.0063 26 1 1.6633 -1.7520 1.2625 27 1 1.7222 -0.2024 2.1455 28 1 6.2036 0.5802 5.2750 29 1 6.0555 -1.3626 0.7652 30 1 7.0880 -1.8336 -1.4196 31 1 5.7291 -1.7543 -3.4692 32 1 3.3342 -1.2102 -3.3486 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274697192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:27 Heat of formation + Delta-G solvation = -37.275446 kcal Electronic energy + Delta-G solvation = -18065.231118 eV Core-core repulsion = 15184.383108 eV Total energy + Delta-G solvation = -2880.848010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39916 -37.56723 -36.94422 -34.14514 -32.84006 -31.99654 -29.84407 -28.54661 -26.60772 -25.63790 -22.92139 -22.10240 -20.58501 -19.37446 -17.56479 -16.86361 -16.37059 -15.70442 -15.32054 -14.49931 -14.42052 -14.06957 -13.76766 -13.27021 -12.89596 -12.78907 -12.47598 -12.36535 -11.95356 -11.61712 -11.43182 -11.16083 -11.13333 -10.83651 -10.55806 -10.50273 -10.35862 -10.20027 -9.31778 -8.94406 -7.88435 -7.56000 -6.79446 -6.46403 -5.00582 2.05885 2.10631 2.97544 3.06311 3.10499 3.61171 3.86479 4.14948 4.20545 4.55799 4.93727 5.25400 5.31258 5.41409 5.54863 5.61327 5.68493 5.83383 5.93700 5.96141 6.08480 6.09141 6.28157 6.36457 6.61331 6.81033 7.01442 7.14094 7.23240 7.43046 7.56426 7.85488 7.95987 8.24737 8.70226 9.08120 10.25551 10.44768 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.008355 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.975268 B = 3350.294250 C = 4397.873297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.071 0.929 4 C 0.084 3.916 5 N -0.576 5.576 6 C 0.551 3.449 7 O -0.558 6.558 8 C -0.537 4.537 9 H 0.075 0.925 10 C 0.088 3.912 11 N -0.746 5.746 12 Si 0.913 3.087 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.273 1.273 16 C 0.124 3.876 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.143 4.143 20 C -0.129 4.129 21 C 0.057 3.943 22 O -0.319 6.319 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.274 0.726 29 H 0.171 0.829 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.218 -0.983 -6.276 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.040 4.040 5 N -0.301 5.301 6 C 0.363 3.637 7 O -0.442 6.442 8 C -0.572 4.572 9 H 0.093 0.907 10 C -0.135 4.135 11 N -0.373 5.373 12 Si 0.737 3.263 13 H -0.185 1.185 14 H -0.198 1.198 15 H -0.198 1.198 16 C 0.026 3.974 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.148 4.148 21 C 0.009 3.991 22 O -0.234 6.234 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.188 0.812 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.561 -0.882 -6.214 9.080 hybrid contribution -0.412 0.201 0.938 1.044 sum -6.973 -0.681 -5.276 8.771 Atomic orbital electron populations 1.21716 0.91946 1.03186 1.02824 1.22774 0.95288 0.95639 0.85052 0.91110 1.22426 0.81654 1.00875 0.99015 1.46344 1.05713 1.70843 1.07190 1.17090 0.86284 0.77782 0.82562 1.90464 1.13951 1.55420 1.84327 1.20152 0.97123 1.47674 0.92217 0.90676 1.25788 0.94397 0.92753 1.00599 1.69990 1.06510 1.29418 1.31428 0.86214 0.80290 0.78606 0.81188 1.18475 1.19778 1.19833 1.18302 0.93764 0.99958 0.85417 1.22155 0.93909 0.98493 1.00367 1.21026 0.99430 1.02086 0.92412 1.20683 0.93084 1.04356 0.98108 1.20154 0.94678 1.05525 0.94479 1.18550 0.83217 1.04507 0.92807 1.85907 1.21225 1.74106 1.42169 0.90264 0.91619 0.91548 0.91623 0.87343 0.91487 0.81182 0.86611 0.86656 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.58 37.16 0.36 -1.33 16 2 C 0.07 1.17 3.59 -26.45 -0.09 1.08 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.08 1.61 5.59 -3.34 -0.02 1.59 16 5 N -0.58 -13.84 3.00 -115.50 -0.35 -14.18 16 6 C 0.55 15.36 7.35 -14.89 -0.11 15.25 16 7 O -0.56 -17.19 11.78 5.13 0.06 -17.13 16 8 C -0.54 -14.29 8.50 -37.50 -0.32 -14.61 16 9 H 0.08 1.80 6.09 -52.49 -0.32 1.48 16 10 C 0.09 2.30 5.49 -17.35 -0.10 2.20 16 11 N -0.75 -21.00 11.76 55.55 0.65 -20.34 16 12 Si 0.91 18.76 29.56 -169.99 -5.02 13.74 16 13 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 C 0.12 2.88 6.32 -83.47 -0.53 2.35 16 17 C -0.13 -2.96 8.94 -39.36 -0.35 -3.32 16 18 C -0.13 -2.48 10.04 -39.55 -0.40 -2.87 16 19 C -0.14 -2.42 10.03 -39.53 -0.40 -2.82 16 20 C -0.13 -2.31 9.97 -39.42 -0.39 -2.70 16 21 C 0.06 1.16 6.52 -39.00 -0.25 0.91 16 22 O -0.32 -6.01 9.97 -19.28 -0.19 -6.20 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.76 8.14 -51.94 -0.42 0.34 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.11 1.99 6.03 -51.93 -0.31 1.67 16 28 H 0.27 6.93 8.29 -40.82 -0.34 6.59 16 29 H 0.17 4.45 5.15 -52.60 -0.27 4.18 16 30 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 269.77 15.07 4.07 4.07 Total: -1.00 -31.92 269.77 -6.81 -38.72 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.42 Total: 5.58 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.60 Total: -4.26 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.31 Total: -34.52 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.13 Total: -23.33 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.92 -6.81 -38.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274697192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.448 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds