Wall clock time and date at job start Sun Mar 29 2020 23:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.69826 * 2 1 4 4 C 1.53530 * 109.58291 * 120.35040 * 2 1 3 5 5 N 1.47290 * 107.60634 * 177.99576 * 4 2 1 6 6 C 1.34772 * 121.14310 * 137.98227 * 5 4 2 7 7 O 1.21771 * 120.00269 * 185.94581 * 6 5 4 8 8 C 1.41818 * 119.99792 * 5.93919 * 6 5 4 9 9 H 1.07999 * 119.99674 * 8.16456 * 8 6 5 10 10 C 1.40136 * 119.99968 * 187.88057 * 8 6 5 11 11 N 1.30631 * 120.00141 * 0.28377 * 10 8 6 12 12 Si 1.86795 * 119.99732 * 180.27833 * 10 8 6 13 13 H 1.48496 * 109.47504 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47136 * 120.00722 * 12 10 8 15 15 H 1.48504 * 109.47138 * 240.00218 * 12 10 8 16 16 C 1.39991 * 117.72078 * 318.24745 * 5 4 2 17 17 C 1.38914 * 120.01504 * 193.99385 * 16 5 4 18 18 C 1.38151 * 119.82584 * 179.86664 * 17 16 5 19 19 C 1.38398 * 120.09699 * 359.75828 * 18 17 16 20 20 C 1.38205 * 120.34009 * 359.89542 * 19 18 17 21 21 C 1.38697 * 120.05220 * 0.02957 * 20 19 18 22 22 O 1.35854 * 119.67966 * 180.15984 * 21 20 19 23 23 H 1.09000 * 109.47277 * 299.65213 * 1 2 3 24 24 H 1.09006 * 109.46751 * 59.65092 * 1 2 3 25 25 H 1.08989 * 109.47048 * 179.64659 * 1 2 3 26 26 H 1.09001 * 109.83525 * 58.46561 * 4 2 1 27 27 H 1.09007 * 109.83402 * 297.51777 * 4 2 1 28 28 H 0.96998 * 120.00205 * 180.02562 * 11 10 8 29 29 H 1.08000 * 120.10119 * 359.60043 * 17 16 5 30 30 H 1.08006 * 119.95209 * 179.74236 * 18 17 16 31 31 H 1.08007 * 119.82852 * 179.91349 * 19 18 17 32 32 H 1.07994 * 119.97124 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0446 -0.7309 1.2483 5 7 3.5158 -0.7477 1.1799 6 6 4.2672 -0.5102 2.2732 7 8 5.4775 -0.4219 2.1728 8 6 3.6482 -0.3629 3.5406 9 1 2.5944 -0.5705 3.6542 10 6 4.4051 0.0462 4.6468 11 7 5.6796 0.2973 4.5093 12 14 3.5913 0.2327 6.3178 13 1 2.1506 -0.1098 6.2078 14 1 4.2438 -0.6800 7.2907 15 1 3.7329 1.6357 6.7835 16 6 4.1070 -1.0134 -0.0610 17 6 5.4580 -1.3284 -0.1338 18 6 6.0368 -1.5926 -1.3601 19 6 5.2718 -1.5484 -2.5126 20 6 3.9257 -1.2426 -2.4456 21 6 3.3338 -0.9772 -1.2197 22 8 2.0093 -0.6806 -1.1623 23 1 -0.3634 0.5084 0.8931 24 1 -0.3633 0.5193 -0.8869 25 1 -0.3633 -1.0275 -0.0063 26 1 1.6633 -1.7520 1.2625 27 1 1.7222 -0.2024 2.1455 28 1 6.2036 0.5802 5.2750 29 1 6.0555 -1.3626 0.7652 30 1 7.0880 -1.8336 -1.4196 31 1 5.7291 -1.7543 -3.4692 32 1 3.3342 -1.2102 -3.3486 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274697192.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:27 Heat of formation + Delta-G solvation = -58.317202 kcal Electronic energy + Delta-G solvation = -18066.143557 eV Core-core repulsion = 15184.383108 eV Total energy + Delta-G solvation = -2881.760449 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.98923 -39.40179 -38.45460 -35.94404 -34.82077 -33.38496 -31.44506 -30.13789 -28.44229 -27.14782 -24.50278 -23.59720 -22.29441 -20.98124 -19.10757 -18.67499 -18.10644 -17.45377 -16.90026 -16.17606 -15.94685 -15.78222 -15.33257 -14.75957 -14.57960 -14.45140 -13.85627 -13.74033 -13.27362 -13.22906 -13.01257 -12.80058 -12.68393 -12.36900 -12.29603 -12.04156 -11.96096 -11.68094 -11.10843 -10.77463 -9.73640 -9.29911 -8.52196 -8.42542 -7.07629 0.50274 0.53414 1.36037 1.37251 1.55687 2.08794 2.23144 2.29321 2.53067 2.94424 3.43709 3.68116 3.89282 3.95968 4.04124 4.24550 4.39365 4.49226 4.56692 4.66161 4.73296 4.85491 4.95256 5.09708 5.17301 5.21428 5.30091 5.43254 5.67804 5.80584 5.87319 6.00007 6.23968 6.56586 6.67379 7.16354 8.26324 8.48214 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024861 B = 0.008355 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.975268 B = 3350.294250 C = 4397.873297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.071 3.929 3 H 0.058 0.942 4 C 0.080 3.920 5 N -0.589 5.589 6 C 0.531 3.469 7 O -0.605 6.605 8 C -0.559 4.559 9 H 0.097 0.903 10 C 0.032 3.968 11 N -0.801 5.801 12 Si 1.002 2.998 13 H -0.241 1.241 14 H -0.268 1.268 15 H -0.265 1.265 16 C 0.084 3.916 17 C -0.163 4.163 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.124 4.124 21 C 0.050 3.950 22 O -0.317 6.317 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.281 0.719 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -1.100 -7.514 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.014 3.986 3 H 0.076 0.924 4 C -0.043 4.043 5 N -0.313 5.313 6 C 0.343 3.657 7 O -0.493 6.493 8 C -0.594 4.594 9 H 0.115 0.885 10 C -0.187 4.187 11 N -0.429 5.429 12 Si 0.820 3.180 13 H -0.164 1.164 14 H -0.193 1.193 15 H -0.189 1.189 16 C -0.014 4.014 17 C -0.184 4.184 18 C -0.150 4.150 19 C -0.141 4.141 20 C -0.142 4.142 21 C 0.003 3.997 22 O -0.232 6.232 23 H 0.119 0.881 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.182 0.818 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.984 -1.011 -7.506 11.751 hybrid contribution 0.379 0.199 1.163 1.239 sum -8.605 -0.812 -6.343 10.721 Atomic orbital electron populations 1.21744 0.87778 1.04398 1.04697 1.22979 0.98187 0.94200 0.83241 0.92436 1.22669 0.79131 1.01816 1.00662 1.46174 1.07446 1.70781 1.06923 1.17559 0.86198 0.77739 0.84186 1.90442 1.15914 1.57365 1.85599 1.20657 0.98342 1.47926 0.92446 0.88510 1.27089 0.94774 0.91392 1.05403 1.70148 1.08785 1.30646 1.33310 0.84900 0.79812 0.78833 0.74412 1.16384 1.19318 1.18929 1.18612 0.94400 1.02222 0.86118 1.21910 0.94309 1.01506 1.00690 1.21290 1.00820 1.01254 0.91635 1.21195 0.92583 1.01246 0.99059 1.20688 0.95388 1.03553 0.94614 1.18846 0.83753 1.04377 0.92760 1.85917 1.20257 1.74160 1.42868 0.88145 0.89988 0.90636 0.90828 0.86977 0.90900 0.85498 0.84397 0.81776 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.58 71.98 0.69 -2.05 16 2 C 0.07 2.31 3.59 30.77 0.11 2.42 16 3 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.08 3.07 5.59 86.41 0.48 3.55 16 5 N -0.59 -29.58 3.00 -637.51 -1.91 -31.50 16 6 C 0.53 31.44 7.35 85.13 0.63 32.06 16 7 O -0.61 -40.37 11.78 -4.57 -0.05 -40.42 16 8 C -0.56 -30.77 8.50 23.62 0.20 -30.57 16 9 H 0.10 4.68 6.09 -2.91 -0.02 4.66 16 10 C 0.03 1.70 5.49 85.33 0.47 2.17 16 11 N -0.80 -47.30 11.76 21.85 0.26 -47.04 16 12 Si 1.00 38.63 29.56 68.60 2.03 40.66 16 13 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 14 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 C 0.08 4.03 6.32 38.27 0.24 4.27 16 17 C -0.16 -7.95 8.94 22.41 0.20 -7.75 16 18 C -0.13 -4.93 10.04 22.29 0.22 -4.70 16 19 C -0.12 -3.73 10.03 22.30 0.22 -3.50 16 20 C -0.12 -4.03 9.97 22.37 0.22 -3.81 16 21 C 0.05 2.02 6.52 22.65 0.15 2.16 16 22 O -0.32 -11.42 9.97 -91.92 -0.92 -12.34 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.11 4.11 6.03 -2.38 -0.01 4.10 16 28 H 0.28 14.85 8.29 -92.71 -0.77 14.08 16 29 H 0.13 7.32 5.15 -4.70 -0.02 7.30 16 30 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -75.66 269.77 4.37 -71.29 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 1.13 Total: 25.09 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 3.84 Total: -5.74 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.66 Total: -78.54 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.97 Total: -52.76 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -75.66 4.37 -71.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274697192.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.974 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds